Protein–RNA interactions for Protein: Q96MR9

ZNF560, Zinc finger protein 560, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF560Q96MR9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC22.05■■□□□ 1.12
ZNF560Q96MR9 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
ZNF560Q96MR9 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC22.05■■□□□ 1.12
ZNF560Q96MR9 PGM5P4-201ENST00000421970 445 ntBASIC22.05■■□□□ 1.12
ZNF560Q96MR9 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC22.05■■□□□ 1.12
ZNF560Q96MR9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.05■■□□□ 1.12
ZNF560Q96MR9 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
ZNF560Q96MR9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
ZNF560Q96MR9 KRT17P1-201ENST00000399211 1546 ntBASIC22.05■■□□□ 1.12
ZNF560Q96MR9 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 KRT18P68-201ENST00000392293 1000 ntBASIC22.04■■□□□ 1.12
ZNF560Q96MR9 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 AC087633.2-202ENST00000565166 1439 ntBASIC22.04■■□□□ 1.12
ZNF560Q96MR9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
ZNF560Q96MR9 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
ZNF560Q96MR9 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 GCK-205ENST00000437084 1385 ntTSL 5 BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 DUSP5P2-201ENST00000426873 1033 ntBASIC22.02■■□□□ 1.12
ZNF560Q96MR9 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
ZNF560Q96MR9 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC22.02■■□□□ 1.11
ZNF560Q96MR9 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 AC091874.3-201ENST00000512672 1195 ntBASIC22.01■■□□□ 1.11
ZNF560Q96MR9 KLF13-207ENST00000560473 489 ntTSL 3 BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 AC105020.6-201ENST00000621523 1217 ntBASIC22.01■■□□□ 1.11
ZNF560Q96MR9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC22.01■■□□□ 1.11
ZNF560Q96MR9 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22■■□□□ 1.11
ZNF560Q96MR9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
ZNF560Q96MR9 AC121338.2-201ENST00000622535 1744 ntBASIC22■■□□□ 1.11
ZNF560Q96MR9 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC22■■□□□ 1.11
ZNF560Q96MR9 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC22■■□□□ 1.11
ZNF560Q96MR9 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22■■□□□ 1.11
ZNF560Q96MR9 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC22■■□□□ 1.11
ZNF560Q96MR9 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 RHEB-204ENST00000472642 900 ntTSL 3 BASIC22■■□□□ 1.11
ZNF560Q96MR9 AC097658.1-201ENST00000475555 843 ntBASIC22■■□□□ 1.11
ZNF560Q96MR9 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC22■■□□□ 1.11
ZNF560Q96MR9 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 AC026310.3-201ENST00000625186 2373 ntBASIC22■■□□□ 1.11
ZNF560Q96MR9 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC22■■□□□ 1.11
ZNF560Q96MR9 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC22■■□□□ 1.11
ZNF560Q96MR9 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
ZNF560Q96MR9 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.99■■□□□ 1.11
ZNF560Q96MR9 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
ZNF560Q96MR9 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
ZNF560Q96MR9 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
ZNF560Q96MR9 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
ZNF560Q96MR9 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.99■■□□□ 1.11
ZNF560Q96MR9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.99■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms