Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VMP1Q96GC9 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 AC080038.1-201ENST00000611274 1154 ntBASIC19.61■□□□□ 0.73
VMP1Q96GC9 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VMP1Q96GC9 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 RARRES2P11-201ENST00000635158 484 ntBASIC19.61■□□□□ 0.73
VMP1Q96GC9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
VMP1Q96GC9 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VMP1Q96GC9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
VMP1Q96GC9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
VMP1Q96GC9 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.61■□□□□ 0.73
VMP1Q96GC9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.6■□□□□ 0.73
VMP1Q96GC9 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC19.6■□□□□ 0.73
VMP1Q96GC9 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VMP1Q96GC9 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.6■□□□□ 0.73
VMP1Q96GC9 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.6■□□□□ 0.73
VMP1Q96GC9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VMP1Q96GC9 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VMP1Q96GC9 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
VMP1Q96GC9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
VMP1Q96GC9 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
VMP1Q96GC9 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.6■□□□□ 0.73
VMP1Q96GC9 AC011767.1-201ENST00000617410 1153 ntBASIC19.6■□□□□ 0.73
VMP1Q96GC9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.6■□□□□ 0.73
VMP1Q96GC9 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
VMP1Q96GC9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
VMP1Q96GC9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VMP1Q96GC9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
VMP1Q96GC9 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.59■□□□□ 0.73
VMP1Q96GC9 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.59■□□□□ 0.73
VMP1Q96GC9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
VMP1Q96GC9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.59■□□□□ 0.73
VMP1Q96GC9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.59■□□□□ 0.73
VMP1Q96GC9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VMP1Q96GC9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
VMP1Q96GC9 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
VMP1Q96GC9 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.58■□□□□ 0.73
VMP1Q96GC9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
VMP1Q96GC9 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
VMP1Q96GC9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
VMP1Q96GC9 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
VMP1Q96GC9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.58■□□□□ 0.73
VMP1Q96GC9 SLC7A5P1-201ENST00000568957 537 ntBASIC19.58■□□□□ 0.72
VMP1Q96GC9 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VMP1Q96GC9 MFSD11-216ENST00000590393 1141 ntBASIC19.58■□□□□ 0.72
VMP1Q96GC9 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
VMP1Q96GC9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VMP1Q96GC9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC19.58■□□□□ 0.72
VMP1Q96GC9 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
VMP1Q96GC9 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
VMP1Q96GC9 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.58■□□□□ 0.72
VMP1Q96GC9 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
VMP1Q96GC9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.57■□□□□ 0.72
VMP1Q96GC9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 SLC7A5P2-201ENST00000553010 536 ntBASIC19.57■□□□□ 0.72
VMP1Q96GC9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.57■□□□□ 0.72
VMP1Q96GC9 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.57■□□□□ 0.72
VMP1Q96GC9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
VMP1Q96GC9 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.57■□□□□ 0.72
VMP1Q96GC9 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.57■□□□□ 0.72
VMP1Q96GC9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
VMP1Q96GC9 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.56■□□□□ 0.72
VMP1Q96GC9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.56■□□□□ 0.72
VMP1Q96GC9 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.56■□□□□ 0.72
VMP1Q96GC9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 AC090192.1-201ENST00000517740 490 ntBASIC19.56■□□□□ 0.72
VMP1Q96GC9 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.56■□□□□ 0.72
VMP1Q96GC9 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
VMP1Q96GC9 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.56■□□□□ 0.72
VMP1Q96GC9 AC073111.5-205ENST00000641717 521 ntBASIC19.56■□□□□ 0.72
VMP1Q96GC9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms