Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHFRQ96EP1 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CHFRQ96EP1 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.03■□□□□ 0.96
CHFRQ96EP1 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHFRQ96EP1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHFRQ96EP1 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.03■□□□□ 0.96
CHFRQ96EP1 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.03■□□□□ 0.96
CHFRQ96EP1 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
CHFRQ96EP1 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CHFRQ96EP1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CHFRQ96EP1 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.03■□□□□ 0.96
CHFRQ96EP1 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 AC242852.2-201ENST00000615738 1807 ntBASIC21.02■□□□□ 0.96
CHFRQ96EP1 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.02■□□□□ 0.96
CHFRQ96EP1 POM121L13P-201ENST00000422362 380 ntBASIC21.02■□□□□ 0.96
CHFRQ96EP1 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC21.02■□□□□ 0.96
CHFRQ96EP1 C2orf69P4-201ENST00000565394 541 ntBASIC21.02■□□□□ 0.96
CHFRQ96EP1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.02■□□□□ 0.96
CHFRQ96EP1 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CHFRQ96EP1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.02■□□□□ 0.96
CHFRQ96EP1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 AC087633.2-202ENST00000565166 1439 ntBASIC21.01■□□□□ 0.95
CHFRQ96EP1 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CHFRQ96EP1 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.01■□□□□ 0.95
CHFRQ96EP1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21■□□□□ 0.95
CHFRQ96EP1 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CHFRQ96EP1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC21■□□□□ 0.95
CHFRQ96EP1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21■□□□□ 0.95
CHFRQ96EP1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21■□□□□ 0.95
CHFRQ96EP1 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CHFRQ96EP1 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 MIR4497-201ENST00000583208 89 ntBASIC21■□□□□ 0.95
CHFRQ96EP1 SPIB-206ENST00000596074 847 ntTSL 2 BASIC21■□□□□ 0.95
CHFRQ96EP1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
CHFRQ96EP1 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.99■□□□□ 0.95
CHFRQ96EP1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.99■□□□□ 0.95
CHFRQ96EP1 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.99■□□□□ 0.95
CHFRQ96EP1 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CHFRQ96EP1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.99■□□□□ 0.95
CHFRQ96EP1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHFRQ96EP1 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CHFRQ96EP1 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.99■□□□□ 0.95
CHFRQ96EP1 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.98■□□□□ 0.95
CHFRQ96EP1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.98■□□□□ 0.95
CHFRQ96EP1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.98■□□□□ 0.95
CHFRQ96EP1 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.98■□□□□ 0.95
CHFRQ96EP1 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CHFRQ96EP1 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CHFRQ96EP1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CHFRQ96EP1 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms