Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3Q7Z494 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC28.21■■■□□ 2.11
NPHP3Q7Z494 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3Q7Z494 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
NPHP3Q7Z494 MMP23A-201ENST00000234610 1017 ntBASIC28.2■■■□□ 2.11
NPHP3Q7Z494 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC28.2■■■□□ 2.11
NPHP3Q7Z494 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC28.2■■■□□ 2.11
NPHP3Q7Z494 AC026471.6-201ENST00000622954 1905 ntBASIC28.2■■■□□ 2.11
NPHP3Q7Z494 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.1
NPHP3Q7Z494 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC28.2■■■□□ 2.1
NPHP3Q7Z494 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC28.2■■■□□ 2.1
NPHP3Q7Z494 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP3Q7Z494 RER1-204ENST00000378518 522 ntTSL 3 BASIC28.19■■■□□ 2.1
NPHP3Q7Z494 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP3Q7Z494 AL590326.2-201ENST00000625139 305 ntBASIC28.19■■■□□ 2.1
NPHP3Q7Z494 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC28.19■■■□□ 2.1
NPHP3Q7Z494 AC092865.7-201ENST00000641832 219 ntBASIC28.19■■■□□ 2.1
NPHP3Q7Z494 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC28.19■■■□□ 2.1
NPHP3Q7Z494 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
NPHP3Q7Z494 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC28.19■■■□□ 2.1
NPHP3Q7Z494 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 SAPCD2P4-201ENST00000424595 1171 ntBASIC28.18■■■□□ 2.1
NPHP3Q7Z494 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 AL049597.2-201ENST00000565575 961 ntBASIC28.18■■■□□ 2.1
NPHP3Q7Z494 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC28.18■■■□□ 2.1
NPHP3Q7Z494 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 MOK-233ENST00000524214 1539 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
NPHP3Q7Z494 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 AC010542.4-201ENST00000563151 1910 ntBASIC28.16■■■□□ 2.1
NPHP3Q7Z494 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 AL390719.1-204ENST00000412397 1219 ntBASIC28.16■■■□□ 2.1
NPHP3Q7Z494 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 AC145285.6-201ENST00000604632 637 ntBASIC28.16■■■□□ 2.1
NPHP3Q7Z494 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
NPHP3Q7Z494 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
NPHP3Q7Z494 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP3Q7Z494 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP3Q7Z494 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
NPHP3Q7Z494 AL355355.2-201ENST00000442321 338 ntBASIC28.15■■■□□ 2.1
NPHP3Q7Z494 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC28.15■■■□□ 2.1
NPHP3Q7Z494 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC28.15■■■□□ 2.1
NPHP3Q7Z494 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC28.14■■■□□ 2.1
NPHP3Q7Z494 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
NPHP3Q7Z494 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC28.14■■■□□ 2.09
NPHP3Q7Z494 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC28.14■■■□□ 2.09
NPHP3Q7Z494 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC28.14■■■□□ 2.09
NPHP3Q7Z494 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP3Q7Z494 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC28.13■■■□□ 2.09
NPHP3Q7Z494 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP3Q7Z494 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC28.13■■■□□ 2.09
NPHP3Q7Z494 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
NPHP3Q7Z494 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC28.13■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms