Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
USF3Q68DE3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
USF3Q68DE3 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF3Q68DE3 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF3Q68DE3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USF3Q68DE3 AL596275.1-201ENST00000423464 877 ntBASIC17.67■□□□□ 0.42
USF3Q68DE3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC17.67■□□□□ 0.42
USF3Q68DE3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.67■□□□□ 0.42
USF3Q68DE3 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.66■□□□□ 0.42
USF3Q68DE3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.66■□□□□ 0.42
USF3Q68DE3 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
USF3Q68DE3 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.66■□□□□ 0.42
USF3Q68DE3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.66■□□□□ 0.42
USF3Q68DE3 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC17.66■□□□□ 0.42
USF3Q68DE3 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
USF3Q68DE3 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 LSM12P1-201ENST00000411836 588 ntBASIC17.66■□□□□ 0.42
USF3Q68DE3 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.66■□□□□ 0.42
USF3Q68DE3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
USF3Q68DE3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.66■□□□□ 0.42
USF3Q68DE3 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.65■□□□□ 0.42
USF3Q68DE3 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 AC245052.3-201ENST00000450182 901 ntBASIC17.65■□□□□ 0.42
USF3Q68DE3 UNC93B4-201ENST00000505679 747 ntBASIC17.65■□□□□ 0.42
USF3Q68DE3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC17.65■□□□□ 0.42
USF3Q68DE3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.65■□□□□ 0.42
USF3Q68DE3 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
USF3Q68DE3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC17.64■□□□□ 0.42
USF3Q68DE3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.42
USF3Q68DE3 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
USF3Q68DE3 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.64■□□□□ 0.42
USF3Q68DE3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
USF3Q68DE3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.64■□□□□ 0.42
USF3Q68DE3 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.64■□□□□ 0.42
USF3Q68DE3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC17.64■□□□□ 0.41
USF3Q68DE3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.64■□□□□ 0.41
USF3Q68DE3 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.64■□□□□ 0.41
USF3Q68DE3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC17.64■□□□□ 0.41
USF3Q68DE3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 CYP2T3P-201ENST00000601990 817 ntBASIC17.64■□□□□ 0.41
USF3Q68DE3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.64■□□□□ 0.41
USF3Q68DE3 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
USF3Q68DE3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC17.63■□□□□ 0.41
USF3Q68DE3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC17.63■□□□□ 0.41
USF3Q68DE3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.63■□□□□ 0.41
USF3Q68DE3 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.63■□□□□ 0.41
USF3Q68DE3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.63■□□□□ 0.41
USF3Q68DE3 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 AP006294.2-201ENST00000641667 209 ntBASIC17.63■□□□□ 0.41
USF3Q68DE3 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.63■□□□□ 0.41
USF3Q68DE3 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.63■□□□□ 0.41
USF3Q68DE3 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC17.63■□□□□ 0.41
USF3Q68DE3 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC17.63■□□□□ 0.41
USF3Q68DE3 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.63■□□□□ 0.41
USF3Q68DE3 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC17.63■□□□□ 0.41
USF3Q68DE3 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
USF3Q68DE3 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF3Q68DE3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF3Q68DE3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
USF3Q68DE3 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC17.62■□□□□ 0.41
USF3Q68DE3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
USF3Q68DE3 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.62■□□□□ 0.41
USF3Q68DE3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms