Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 AC068473.5-201ENST00000616428 2072 ntBASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 GRAP-204ENST00000573099 846 ntTSL 3 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 P4HB-223ENST00000576390 439 ntTSL 4 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 CD177P1-201ENST00000606252 935 ntBASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
CCDC88AQ3V6T2 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 C11orf96-202ENST00000528572 1834 ntBASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 AL049597.2-201ENST00000565575 961 ntBASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CCDC88AQ3V6T2 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CCDC88AQ3V6T2 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.65
CCDC88AQ3V6T2 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
CCDC88AQ3V6T2 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC25.38■■□□□ 1.65
CCDC88AQ3V6T2 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 MFF-205ENST00000354503 1085 ntTSL 2 BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 KRT18P68-201ENST00000392293 1000 ntBASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 AL353708.3-201ENST00000610272 989 ntBASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CCDC88AQ3V6T2 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 AC233723.2-201ENST00000623798 2106 ntBASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 AC110285.5-201ENST00000611501 352 ntBASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 MIR6786-201ENST00000616843 113 ntBASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 GUSBP5-202ENST00000510805 1989 ntBASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC25.36■■□□□ 1.65
CCDC88AQ3V6T2 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 AL135905.2-201ENST00000584934 1404 ntBASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CCDC88AQ3V6T2 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 RARRES2P10-201ENST00000564312 460 ntBASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 GALC-202ENST00000393568 2054 ntTSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 SAPCD2P1-201ENST00000395413 1184 ntBASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.34■■□□□ 1.65
CCDC88AQ3V6T2 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC25.34■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms