Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 YDR442WYDR442W 393 nt3.89□□□□□ -1.79
UBP3Q01477 JIP3YLR331C 378 nt3.89□□□□□ -1.79
UBP3Q01477 RPL23AYBL087C 414 nt3.89□□□□□ -1.79
UBP3Q01477 snR13snR13 124 nt3.89□□□□□ -1.79
UBP3Q01477 MED1YPR070W 1701 nt3.89□□□□□ -1.79
UBP3Q01477 SLP1YOR154W 1764 nt3.89□□□□□ -1.79
UBP3Q01477 TRS120YDR407C 3870 nt3.88□□□□□ -1.79
UBP3Q01477 MDV1YJL112W 2145 nt3.88□□□□□ -1.79 RIP-Chip
UBP3Q01477 SPT10YJL127C 1923 nt3.88□□□□□ -1.79
UBP3Q01477 YDR183C-AYDR183C-A 258 nt3.88□□□□□ -1.79
UBP3Q01477 SGN1YIR001C 753 nt3.88□□□□□ -1.79
UBP3Q01477 HCH1YNL281W 462 nt3.88□□□□□ -1.79 RIP-Chip
UBP3Q01477 TIR2YOR010C 756 nt3.88□□□□□ -1.79
UBP3Q01477 RPS7AYOR096W 573 nt3.88□□□□□ -1.79
UBP3Q01477 BIL1YOR304C-A 231 nt3.88□□□□□ -1.79
UBP3Q01477 SLA1YBL007C 3735 nt3.88□□□□□ -1.79
UBP3Q01477 CEP3YMR168C 1827 nt3.88□□□□□ -1.79
UBP3Q01477 APE2YKL157W 2859 nt3.88□□□□□ -1.79
UBP3Q01477 YKL222CYKL222C 2118 nt3.88□□□□□ -1.79
UBP3Q01477 SRC1YML034W 2505 nt3.87□□□□□ -1.79
UBP3Q01477 YER066C-AYER066C-A 501 nt3.87□□□□□ -1.79
UBP3Q01477 YER091C-AYER091C-A 222 nt3.87□□□□□ -1.79
UBP3Q01477 YNL179CYNL179C 438 nt3.87□□□□□ -1.79
UBP3Q01477 YBL108WYBL108W 306 nt3.87□□□□□ -1.79
UBP3Q01477 TAF2YCR042C 4224 nt3.87□□□□□ -1.79 RIP-Chip
UBP3Q01477 NIC96YFR002W 2520 nt3.87□□□□□ -1.79
UBP3Q01477 NOP4YPL043W 2058 nt3.86□□□□□ -1.79 RIP-Chip
UBP3Q01477 ATG21YPL100W 1491 nt3.86□□□□□ -1.79 RIP-Chip
UBP3Q01477 YGL074CYGL074C 327 nt3.86□□□□□ -1.79
UBP3Q01477 ISF1YMR081C 1017 nt3.86□□□□□ -1.79
UBP3Q01477 SIP18YMR175W 240 nt3.86□□□□□ -1.79
UBP3Q01477 YOL085W-AYOL085W-A 213 nt3.86□□□□□ -1.79
UBP3Q01477 DGK1YOR311C 873 nt3.86□□□□□ -1.79
UBP3Q01477 TIM12YBR091C 330 nt3.86□□□□□ -1.79
UBP3Q01477 PBS2YJL128C 2007 nt3.86□□□□□ -1.79 RIP-Chip
UBP3Q01477 XRN1YGL173C 4587 nt3.86□□□□□ -1.79
UBP3Q01477 EMP70YLR083C 2004 nt3.85□□□□□ -1.79
UBP3Q01477 RRN6YBL014C 2685 nt3.85□□□□□ -1.79
UBP3Q01477 GPI8YDR331W 1236 nt3.85□□□□□ -1.79
UBP3Q01477 SPT4YGR063C 309 nt3.85□□□□□ -1.79
UBP3Q01477 YKL033W-AYKL033W-A 711 nt3.85□□□□□ -1.79
UBP3Q01477 SWD3YBR175W 948 nt3.85□□□□□ -1.79
UBP3Q01477 YEL1YBL060W 2064 nt3.85□□□□□ -1.79
UBP3Q01477 YJR030CYJR030C 2238 nt3.85□□□□□ -1.79
UBP3Q01477 ARK1YNL020C 1917 nt3.84□□□□□ -1.79
UBP3Q01477 YDR464C-AYDR464C-A 189 nt3.84□□□□□ -1.79
UBP3Q01477 RMT2YDR465C 1239 nt3.84□□□□□ -1.79
UBP3Q01477 RPS26BYER131W 360 nt3.84□□□□□ -1.79 RIP-Chip
UBP3Q01477 YHR214W-AYHR214W-A 486 nt3.84□□□□□ -1.79
UBP3Q01477 YJL202CYJL202C 348 nt3.84□□□□□ -1.79
UBP3Q01477 YAR068WYAR068W 486 nt3.84□□□□□ -1.79
UBP3Q01477 YMR046W-AYMR046W-A 129 nt3.84□□□□□ -1.79
UBP3Q01477 YDR034C-DYDR034C-D 5313 nt3.84□□□□□ -1.8
UBP3Q01477 NDT80YHR124W 1884 nt3.84□□□□□ -1.8 RIP-Chip
UBP3Q01477 NUP159YIL115C 4383 nt3.83□□□□□ -1.8
UBP3Q01477 YDL242WYDL242W 354 nt3.83□□□□□ -1.8
UBP3Q01477 YJL015CYJL015C 285 nt3.83□□□□□ -1.8
UBP3Q01477 YNL198CYNL198C 303 nt3.83□□□□□ -1.8
UBP3Q01477 SPP382YLR424W 2127 nt3.83□□□□□ -1.8 RIP-Chip
UBP3Q01477 FAA2YER015W 2235 nt3.83□□□□□ -1.8
UBP3Q01477 SPC72YAL047C 1869 nt3.82□□□□□ -1.8 RIP-Chip
UBP3Q01477 YGR265WYGR265W 411 nt3.82□□□□□ -1.8
UBP3Q01477 tW(UCA)QtW(UCA)Q 74 nt3.82□□□□□ -1.8
UBP3Q01477 YLR230WYLR230W 306 nt3.82□□□□□ -1.8
UBP3Q01477 YLR302CYLR302C 363 nt3.82□□□□□ -1.8
UBP3Q01477 RSC1YGR056W 2787 nt3.82□□□□□ -1.8
UBP3Q01477 YFL063WYFL063W 456 nt3.81□□□□□ -1.8
UBP3Q01477 PET191YJR034W 327 nt3.81□□□□□ -1.8
UBP3Q01477 FCF2YLR051C 654 nt3.81□□□□□ -1.8
UBP3Q01477 TVP18YMR071C 504 nt3.81□□□□□ -1.8
UBP3Q01477 SSN8YNL025C 972 nt3.81□□□□□ -1.8
UBP3Q01477 YPL238CYPL238C 390 nt3.81□□□□□ -1.8
UBP3Q01477 YPR099CYPR099C 357 nt3.81□□□□□ -1.8
UBP3Q01477 TFB1YDR311W 1929 nt3.8□□□□□ -1.8
UBP3Q01477 EPL1YFL024C 2499 nt3.8□□□□□ -1.8
UBP3Q01477 LCB4YOR171C 1875 nt3.8□□□□□ -1.8
UBP3Q01477 SPT6YGR116W 4356 nt3.8□□□□□ -1.8
UBP3Q01477 YCR081C-AYCR081C-A 237 nt3.8□□□□□ -1.8
UBP3Q01477 YEL018C-AYEL018C-A 534 nt3.8□□□□□ -1.8
UBP3Q01477 CAJ1YER048C 1176 nt3.8□□□□□ -1.8
UBP3Q01477 COX23YHR116W 456 nt3.8□□□□□ -1.8
UBP3Q01477 YHR139C-AYHR139C-A 312 nt3.8□□□□□ -1.8
UBP3Q01477 YJL197C-AYJL197C-A 282 nt3.8□□□□□ -1.8
UBP3Q01477 AIM26YKL037W 357 nt3.8□□□□□ -1.8
UBP3Q01477 HSP10YOR020C 321 nt3.8□□□□□ -1.8
UBP3Q01477 YDL180WYDL180W 1644 nt3.8□□□□□ -1.8
UBP3Q01477 YGR027W-BYGR027W-B 5268 nt3.79□□□□□ -1.8
UBP3Q01477 YLR227W-BYLR227W-B 5268 nt3.79□□□□□ -1.8
UBP3Q01477 YPR158C-DYPR158C-D 5268 nt3.79□□□□□ -1.8
UBP3Q01477 ALY1YKR021W 2748 nt3.79□□□□□ -1.8
UBP3Q01477 ATP17YDR377W 306 nt3.79□□□□□ -1.8
UBP3Q01477 CYC7YEL039C 342 nt3.79□□□□□ -1.8
UBP3Q01477 MRP8YKL142W 660 nt3.79□□□□□ -1.8
UBP3Q01477 OST6YML019W 999 nt3.79□□□□□ -1.8
UBP3Q01477 PRE8YML092C 753 nt3.79□□□□□ -1.8
UBP3Q01477 RPS7BYNL096C 573 nt3.79□□□□□ -1.8
UBP3Q01477 MES1YGR264C 2256 nt3.79□□□□□ -1.8
UBP3Q01477 NMA111YNL123W 2994 nt3.79□□□□□ -1.8
UBP3Q01477 PRP22YER013W 3438 nt3.78□□□□□ -1.8 RIP-Chip
UBP3Q01477 BIT61YJL058C 1632 nt3.78□□□□□ -1.8
Retrieved 100 of 7,029 protein–RNA pairs in 46.6 ms