Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 AC073130.3-201ENST00000624389 2278 ntBASIC21.3■■□□□ 1
IRX4P78413 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.29■■□□□ 1
IRX4P78413 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.29■■□□□ 1
IRX4P78413 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
IRX4P78413 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.29■■□□□ 1
IRX4P78413 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.29■■□□□ 1
IRX4P78413 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.29■■□□□ 1
IRX4P78413 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.29■■□□□ 1
IRX4P78413 RNA5SP413-201ENST00000516373 109 ntBASIC21.29■■□□□ 1
IRX4P78413 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21.29■■□□□ 1
IRX4P78413 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
IRX4P78413 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
IRX4P78413 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.28■■□□□ 1
IRX4P78413 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
IRX4P78413 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
IRX4P78413 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.28■■□□□ 1
IRX4P78413 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
IRX4P78413 AL157384.1-201ENST00000445995 2473 ntBASIC21.28■■□□□ 1
IRX4P78413 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.28■■□□□ 1
IRX4P78413 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
IRX4P78413 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.28■■□□□ 1
IRX4P78413 AC010536.3-201ENST00000620306 533 ntBASIC21.28■■□□□ 1
IRX4P78413 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
IRX4P78413 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
IRX4P78413 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC21.28■■□□□ 1
IRX4P78413 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
IRX4P78413 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.28■■□□□ 1
IRX4P78413 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
IRX4P78413 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.27■■□□□ 1
IRX4P78413 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
IRX4P78413 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.27■■□□□ 1
IRX4P78413 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC21.27■■□□□ 1
IRX4P78413 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.27■■□□□ 1
IRX4P78413 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
IRX4P78413 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.27■■□□□ 1
IRX4P78413 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.27■■□□□ 1
IRX4P78413 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.27■■□□□ 1
IRX4P78413 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.27■■□□□ 1
IRX4P78413 MIR4758-201ENST00000577688 71 ntBASIC21.27■■□□□ 1
IRX4P78413 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.27■■□□□ 1
IRX4P78413 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.27■■□□□ 1
IRX4P78413 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC21.27■■□□□ 1
IRX4P78413 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.27■■□□□ 1
IRX4P78413 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
IRX4P78413 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.27■□□□□ 0.99
IRX4P78413 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
IRX4P78413 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
IRX4P78413 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.26■□□□□ 0.99
IRX4P78413 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
IRX4P78413 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.26■□□□□ 0.99
IRX4P78413 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC21.26■□□□□ 0.99
IRX4P78413 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 OR7E47P-201ENST00000546390 1422 ntBASIC21.26■□□□□ 0.99
IRX4P78413 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
IRX4P78413 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.25■□□□□ 0.99
IRX4P78413 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
IRX4P78413 PRORSD1P-201ENST00000295112 541 ntBASIC21.25■□□□□ 0.99
IRX4P78413 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
IRX4P78413 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.25■□□□□ 0.99
IRX4P78413 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.25■□□□□ 0.99
IRX4P78413 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.25■□□□□ 0.99
IRX4P78413 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
IRX4P78413 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.25■□□□□ 0.99
IRX4P78413 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
IRX4P78413 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
IRX4P78413 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
IRX4P78413 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
IRX4P78413 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
IRX4P78413 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
IRX4P78413 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
IRX4P78413 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
IRX4P78413 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.24■□□□□ 0.99
IRX4P78413 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.24■□□□□ 0.99
IRX4P78413 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.24■□□□□ 0.99
IRX4P78413 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.24■□□□□ 0.99
IRX4P78413 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
IRX4P78413 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
IRX4P78413 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
IRX4P78413 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
IRX4P78413 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
IRX4P78413 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.24■□□□□ 0.99
IRX4P78413 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
IRX4P78413 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.23■□□□□ 0.99
IRX4P78413 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.23■□□□□ 0.99
IRX4P78413 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
IRX4P78413 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms