Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP004607.7-201ENST00000527152 1677 ntBASIC16.67■□□□□ 0.26
CDX1P47902 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
CDX1P47902 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC16.67■□□□□ 0.26
CDX1P47902 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC16.67■□□□□ 0.26
CDX1P47902 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC16.67■□□□□ 0.26
CDX1P47902 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC16.67■□□□□ 0.26
CDX1P47902 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CDX1P47902 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CDX1P47902 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CDX1P47902 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
CDX1P47902 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC16.66■□□□□ 0.26
CDX1P47902 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CDX1P47902 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CDX1P47902 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
CDX1P47902 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC16.66■□□□□ 0.26
CDX1P47902 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC16.66■□□□□ 0.26
CDX1P47902 KRT19P1-201ENST00000405746 1186 ntBASIC16.66■□□□□ 0.26
CDX1P47902 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC16.66■□□□□ 0.26
CDX1P47902 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC16.66■□□□□ 0.26
CDX1P47902 AL137784.2-201ENST00000607332 1000 ntBASIC16.66■□□□□ 0.26
CDX1P47902 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CDX1P47902 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 AP004607.4-201ENST00000530158 1459 ntBASIC16.66■□□□□ 0.26
CDX1P47902 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CDX1P47902 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CDX1P47902 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 AC018445.3-201ENST00000624177 1945 ntBASIC16.65■□□□□ 0.26
CDX1P47902 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
CDX1P47902 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
CDX1P47902 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CDX1P47902 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CDX1P47902 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDX1P47902 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
CDX1P47902 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX1P47902 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC16.64■□□□□ 0.25
CDX1P47902 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX1P47902 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC16.64■□□□□ 0.25
CDX1P47902 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX1P47902 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC16.64■□□□□ 0.25
CDX1P47902 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC16.64■□□□□ 0.25
CDX1P47902 TESC-206ENST00000541210 936 ntTSL 3 BASIC16.64■□□□□ 0.25
CDX1P47902 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.64■□□□□ 0.25
CDX1P47902 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC16.64■□□□□ 0.25
CDX1P47902 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX1P47902 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CDX1P47902 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX1P47902 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDX1P47902 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC16.64■□□□□ 0.25
CDX1P47902 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CDX1P47902 BX323043.1-201ENST00000641006 1765 ntBASIC16.64■□□□□ 0.25
CDX1P47902 PODN-203ENST00000395871 2744 ntTSL 5 BASIC16.63■□□□□ 0.25
CDX1P47902 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDX1P47902 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms