Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHMT2P34897 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.13■□□□□ 0.81
SHMT2P34897 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHMT2P34897 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHMT2P34897 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.13■□□□□ 0.81
SHMT2P34897 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
SHMT2P34897 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.12■□□□□ 0.81
SHMT2P34897 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
SHMT2P34897 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.12■□□□□ 0.81
SHMT2P34897 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 AC091799.1-201ENST00000422823 811 ntBASIC20.12■□□□□ 0.81
SHMT2P34897 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.12■□□□□ 0.81
SHMT2P34897 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.12■□□□□ 0.81
SHMT2P34897 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC20.12■□□□□ 0.81
SHMT2P34897 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.12■□□□□ 0.81
SHMT2P34897 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
SHMT2P34897 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.12■□□□□ 0.81
SHMT2P34897 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.12■□□□□ 0.81
SHMT2P34897 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHMT2P34897 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.11■□□□□ 0.81
SHMT2P34897 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
SHMT2P34897 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.11■□□□□ 0.81
SHMT2P34897 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.11■□□□□ 0.81
SHMT2P34897 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHMT2P34897 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.11■□□□□ 0.81
SHMT2P34897 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHMT2P34897 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.11■□□□□ 0.81
SHMT2P34897 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHMT2P34897 CYP2T1P-201ENST00000432607 1285 ntBASIC20.11■□□□□ 0.81
SHMT2P34897 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC20.11■□□□□ 0.81
SHMT2P34897 PBX1-209ENST00000485769 834 ntTSL 2 BASIC20.11■□□□□ 0.81
SHMT2P34897 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
SHMT2P34897 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
SHMT2P34897 AF106564.1-201ENST00000607058 2553 ntBASIC20.11■□□□□ 0.81
SHMT2P34897 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
SHMT2P34897 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.11■□□□□ 0.81
SHMT2P34897 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.11■□□□□ 0.81
SHMT2P34897 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
SHMT2P34897 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHMT2P34897 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHMT2P34897 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC20.1■□□□□ 0.81
SHMT2P34897 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.1■□□□□ 0.81
SHMT2P34897 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHMT2P34897 CDV3P1-201ENST00000471403 739 ntBASIC20.1■□□□□ 0.81
SHMT2P34897 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.1■□□□□ 0.81
SHMT2P34897 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHMT2P34897 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
SHMT2P34897 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.1■□□□□ 0.81
SHMT2P34897 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHMT2P34897 AC069236.1-201ENST00000604339 616 ntBASIC20.1■□□□□ 0.81
SHMT2P34897 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.1■□□□□ 0.81
SHMT2P34897 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SHMT2P34897 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.1■□□□□ 0.81
SHMT2P34897 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SHMT2P34897 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.1■□□□□ 0.81
SHMT2P34897 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
SHMT2P34897 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.09■□□□□ 0.81
SHMT2P34897 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.09■□□□□ 0.81
SHMT2P34897 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.09■□□□□ 0.81
SHMT2P34897 AL050303.2-201ENST00000619798 666 ntBASIC20.09■□□□□ 0.81
SHMT2P34897 AC008694.1-202ENST00000636953 945 ntBASIC20.09■□□□□ 0.81
SHMT2P34897 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SHMT2P34897 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SHMT2P34897 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SHMT2P34897 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHMT2P34897 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHMT2P34897 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHMT2P34897 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHMT2P34897 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHMT2P34897 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.08■□□□□ 0.81
SHMT2P34897 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.08■□□□□ 0.81
SHMT2P34897 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SHMT2P34897 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
SHMT2P34897 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SHMT2P34897 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SHMT2P34897 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SHMT2P34897 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SHMT2P34897 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.08■□□□□ 0.8
SHMT2P34897 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHMT2P34897 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
SHMT2P34897 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.07■□□□□ 0.8
SHMT2P34897 NCF1B-203ENST00000435988 1254 ntBASIC20.07■□□□□ 0.8
SHMT2P34897 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.07■□□□□ 0.8
SHMT2P34897 AC133552.2-202ENST00000575694 574 ntBASIC20.07■□□□□ 0.8
SHMT2P34897 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.07■□□□□ 0.8
SHMT2P34897 AL121832.2-201ENST00000610979 668 ntBASIC20.07■□□□□ 0.8
SHMT2P34897 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms