Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
PTPN4P29074 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
PTPN4P29074 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
PTPN4P29074 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 AC087289.5-201ENST00000586076 3175 ntBASIC20.58■□□□□ 0.89
PTPN4P29074 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.58■□□□□ 0.89
PTPN4P29074 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PTPN4P29074 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
PTPN4P29074 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.58■□□□□ 0.89
PTPN4P29074 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.58■□□□□ 0.89
PTPN4P29074 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.58■□□□□ 0.89
PTPN4P29074 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.58■□□□□ 0.89
PTPN4P29074 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN4P29074 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
PTPN4P29074 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN4P29074 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
PTPN4P29074 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
PTPN4P29074 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
PTPN4P29074 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN4P29074 BX005040.4-201ENST00000637145 1518 ntBASIC20.58■□□□□ 0.88
PTPN4P29074 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
PTPN4P29074 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
PTPN4P29074 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
PTPN4P29074 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.57■□□□□ 0.88
PTPN4P29074 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 AC010141.3-201ENST00000456659 717 ntBASIC20.57■□□□□ 0.88
PTPN4P29074 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.57■□□□□ 0.88
PTPN4P29074 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.57■□□□□ 0.88
PTPN4P29074 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.57■□□□□ 0.88
PTPN4P29074 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PTPN4P29074 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
PTPN4P29074 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN4P29074 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN4P29074 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN4P29074 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PTPN4P29074 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN4P29074 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN4P29074 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.56■□□□□ 0.88
PTPN4P29074 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.56■□□□□ 0.88
PTPN4P29074 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN4P29074 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PTPN4P29074 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.56■□□□□ 0.88
PTPN4P29074 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN4P29074 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PTPN4P29074 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN4P29074 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN4P29074 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.55■□□□□ 0.88
PTPN4P29074 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.55■□□□□ 0.88
PTPN4P29074 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.55■□□□□ 0.88
PTPN4P29074 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.55■□□□□ 0.88
PTPN4P29074 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN4P29074 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC20.55■□□□□ 0.88
PTPN4P29074 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PTPN4P29074 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
PTPN4P29074 AC006128.1-201ENST00000624704 1661 ntBASIC20.54■□□□□ 0.88
PTPN4P29074 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.54■□□□□ 0.88
PTPN4P29074 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.54■□□□□ 0.88
PTPN4P29074 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.54■□□□□ 0.88
PTPN4P29074 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC20.54■□□□□ 0.88
PTPN4P29074 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PTPN4P29074 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PTPN4P29074 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms