Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 KRT18P68-201ENST00000392293 1000 ntBASIC21.74■■□□□ 1.07
BDNFP23560 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.74■■□□□ 1.07
BDNFP23560 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC21.74■■□□□ 1.07
BDNFP23560 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.74■■□□□ 1.07
BDNFP23560 AC097658.1-201ENST00000475555 843 ntBASIC21.74■■□□□ 1.07
BDNFP23560 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC21.74■■□□□ 1.07
BDNFP23560 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC21.74■■□□□ 1.07
BDNFP23560 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
BDNFP23560 MYC-209ENST00000641252 345 ntBASIC21.74■■□□□ 1.07
BDNFP23560 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC21.74■■□□□ 1.07
BDNFP23560 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 AF106564.1-201ENST00000607058 2553 ntBASIC21.74■■□□□ 1.07
BDNFP23560 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
BDNFP23560 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.74■■□□□ 1.07
BDNFP23560 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.73■■□□□ 1.07
BDNFP23560 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC21.73■■□□□ 1.07
BDNFP23560 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC21.73■■□□□ 1.07
BDNFP23560 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.73■■□□□ 1.07
BDNFP23560 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC21.73■■□□□ 1.07
BDNFP23560 AC083880.1-201ENST00000608266 535 ntBASIC21.73■■□□□ 1.07
BDNFP23560 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.73■■□□□ 1.07
BDNFP23560 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.73■■□□□ 1.07
BDNFP23560 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.73■■□□□ 1.07
BDNFP23560 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
BDNFP23560 GCK-205ENST00000437084 1385 ntTSL 5 BASIC21.73■■□□□ 1.07
BDNFP23560 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.73■■□□□ 1.07
BDNFP23560 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BDNFP23560 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BDNFP23560 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BDNFP23560 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
BDNFP23560 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
BDNFP23560 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BDNFP23560 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
BDNFP23560 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.72■■□□□ 1.07
BDNFP23560 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.72■■□□□ 1.07
BDNFP23560 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
BDNFP23560 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
BDNFP23560 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC21.72■■□□□ 1.07
BDNFP23560 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.71■■□□□ 1.07
BDNFP23560 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 AC011484.1-201ENST00000377652 1995 ntBASIC21.71■■□□□ 1.07
BDNFP23560 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
BDNFP23560 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC21.71■■□□□ 1.07
BDNFP23560 AL589743.5-201ENST00000616611 1050 ntBASIC21.71■■□□□ 1.07
BDNFP23560 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
BDNFP23560 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
BDNFP23560 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
BDNFP23560 AC026310.3-201ENST00000625186 2373 ntBASIC21.7■■□□□ 1.07
BDNFP23560 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
BDNFP23560 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.7■■□□□ 1.07
BDNFP23560 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
BDNFP23560 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC21.7■■□□□ 1.06
BDNFP23560 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
BDNFP23560 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.7■■□□□ 1.06
BDNFP23560 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.7■■□□□ 1.06
BDNFP23560 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BDNFP23560 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
BDNFP23560 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.7■■□□□ 1.06
BDNFP23560 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC21.7■■□□□ 1.06
BDNFP23560 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BDNFP23560 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC21.7■■□□□ 1.06
BDNFP23560 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
BDNFP23560 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BDNFP23560 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
BDNFP23560 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BDNFP23560 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
BDNFP23560 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
BDNFP23560 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.69■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms