Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
XRCC1P18887 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
XRCC1P18887 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.47■□□□□ 0.87
XRCC1P18887 AC061975.6-201ENST00000579045 1553 ntBASIC20.47■□□□□ 0.87
XRCC1P18887 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
XRCC1P18887 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
XRCC1P18887 MIR663A-201ENST00000385250 93 ntBASIC20.47■□□□□ 0.87
XRCC1P18887 HLA-L-209ENST00000420110 1011 ntBASIC20.47■□□□□ 0.87
XRCC1P18887 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.47■□□□□ 0.87
XRCC1P18887 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC20.47■□□□□ 0.87
XRCC1P18887 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.47■□□□□ 0.87
XRCC1P18887 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.47■□□□□ 0.87
XRCC1P18887 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.47■□□□□ 0.87
XRCC1P18887 AC013268.1-206ENST00000638368 961 ntBASIC20.47■□□□□ 0.87
XRCC1P18887 AC112229.1-201ENST00000639295 961 ntBASIC20.47■□□□□ 0.87
XRCC1P18887 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
XRCC1P18887 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.47■□□□□ 0.87
XRCC1P18887 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.47■□□□□ 0.87
XRCC1P18887 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
XRCC1P18887 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
XRCC1P18887 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
XRCC1P18887 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
XRCC1P18887 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
XRCC1P18887 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
XRCC1P18887 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.46■□□□□ 0.87
XRCC1P18887 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
XRCC1P18887 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.46■□□□□ 0.87
XRCC1P18887 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.46■□□□□ 0.87
XRCC1P18887 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC20.46■□□□□ 0.87
XRCC1P18887 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC20.46■□□□□ 0.87
XRCC1P18887 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.46■□□□□ 0.87
XRCC1P18887 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.46■□□□□ 0.87
XRCC1P18887 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.46■□□□□ 0.87
XRCC1P18887 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.46■□□□□ 0.87
XRCC1P18887 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.45■□□□□ 0.86
XRCC1P18887 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
XRCC1P18887 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.45■□□□□ 0.86
XRCC1P18887 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.45■□□□□ 0.86
XRCC1P18887 AC007322.4-201ENST00000509611 723 ntBASIC20.45■□□□□ 0.86
XRCC1P18887 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.45■□□□□ 0.86
XRCC1P18887 AC005181.1-201ENST00000604782 1256 ntBASIC20.45■□□□□ 0.86
XRCC1P18887 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
XRCC1P18887 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.45■□□□□ 0.86
XRCC1P18887 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
XRCC1P18887 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.44■□□□□ 0.86
XRCC1P18887 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.44■□□□□ 0.86
XRCC1P18887 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
XRCC1P18887 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
XRCC1P18887 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.44■□□□□ 0.86
XRCC1P18887 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
XRCC1P18887 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
XRCC1P18887 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.43■□□□□ 0.86
XRCC1P18887 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
XRCC1P18887 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
XRCC1P18887 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.43■□□□□ 0.86
XRCC1P18887 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC20.43■□□□□ 0.86
XRCC1P18887 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.43■□□□□ 0.86
XRCC1P18887 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.43■□□□□ 0.86
XRCC1P18887 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.43■□□□□ 0.86
XRCC1P18887 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
XRCC1P18887 AL050303.2-201ENST00000619798 666 ntBASIC20.43■□□□□ 0.86
XRCC1P18887 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
XRCC1P18887 FEM1AP1-201ENST00000431297 1995 ntBASIC20.43■□□□□ 0.86
XRCC1P18887 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC1P18887 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC1P18887 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC1P18887 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC1P18887 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC1P18887 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
XRCC1P18887 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms