Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
LIMS3P0CW19 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
LIMS3P0CW19 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMS3P0CW19 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIMS3P0CW19 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIMS3P0CW19 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
LIMS3P0CW19 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 RPP21-222ENST00000433076 577 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
LIMS3P0CW19 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.27■□□□□ 0.52
LIMS3P0CW19 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
LIMS3P0CW19 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
LIMS3P0CW19 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LIMS3P0CW19 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.51
LIMS3P0CW19 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.27■□□□□ 0.51
LIMS3P0CW19 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
LIMS3P0CW19 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
LIMS3P0CW19 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
LIMS3P0CW19 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
LIMS3P0CW19 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 AC018445.3-201ENST00000624177 1945 ntBASIC18.25■□□□□ 0.51
LIMS3P0CW19 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.25■□□□□ 0.51
LIMS3P0CW19 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMS3P0CW19 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC18.24■□□□□ 0.51
LIMS3P0CW19 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.24■□□□□ 0.51
LIMS3P0CW19 AP004607.4-201ENST00000530158 1459 ntBASIC18.24■□□□□ 0.51
LIMS3P0CW19 AC061975.6-201ENST00000579045 1553 ntBASIC18.24■□□□□ 0.51
LIMS3P0CW19 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.24■□□□□ 0.51
LIMS3P0CW19 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.24■□□□□ 0.51
LIMS3P0CW19 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
LIMS3P0CW19 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.23■□□□□ 0.51
LIMS3P0CW19 BX323043.1-201ENST00000641006 1765 ntBASIC18.23■□□□□ 0.51
LIMS3P0CW19 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMS3P0CW19 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC18.23■□□□□ 0.51
LIMS3P0CW19 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
LIMS3P0CW19 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
LIMS3P0CW19 IGHV3-19-201ENST00000521488 291 ntBASIC18.23■□□□□ 0.51
LIMS3P0CW19 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms