Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.67■□□□□ 0.74
SEMA3DO95025 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.67■□□□□ 0.74
SEMA3DO95025 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC19.67■□□□□ 0.74
SEMA3DO95025 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.67■□□□□ 0.74
SEMA3DO95025 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SEMA3DO95025 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SEMA3DO95025 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.66■□□□□ 0.74
SEMA3DO95025 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.66■□□□□ 0.74
SEMA3DO95025 AC091799.1-201ENST00000422823 811 ntBASIC19.66■□□□□ 0.74
SEMA3DO95025 KRT18P5-201ENST00000436075 1291 ntBASIC19.66■□□□□ 0.74
SEMA3DO95025 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.66■□□□□ 0.74
SEMA3DO95025 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SEMA3DO95025 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SEMA3DO95025 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 STAC-204ENST00000457375 1366 ntTSL 2 BASIC19.66■□□□□ 0.74
SEMA3DO95025 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SEMA3DO95025 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SEMA3DO95025 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.66■□□□□ 0.74
SEMA3DO95025 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SEMA3DO95025 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SEMA3DO95025 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
SEMA3DO95025 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.65■□□□□ 0.74
SEMA3DO95025 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.65■□□□□ 0.74
SEMA3DO95025 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.65■□□□□ 0.74
SEMA3DO95025 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.65■□□□□ 0.74
SEMA3DO95025 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.65■□□□□ 0.74
SEMA3DO95025 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.65■□□□□ 0.74
SEMA3DO95025 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SEMA3DO95025 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
SEMA3DO95025 AC007225.1-201ENST00000566331 1836 ntBASIC19.65■□□□□ 0.74
SEMA3DO95025 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.65■□□□□ 0.74
SEMA3DO95025 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SEMA3DO95025 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SEMA3DO95025 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SEMA3DO95025 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SEMA3DO95025 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
SEMA3DO95025 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SEMA3DO95025 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
SEMA3DO95025 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.64■□□□□ 0.73
SEMA3DO95025 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SEMA3DO95025 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.64■□□□□ 0.73
SEMA3DO95025 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
SEMA3DO95025 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SEMA3DO95025 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.64■□□□□ 0.73
SEMA3DO95025 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEMA3DO95025 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEMA3DO95025 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SEMA3DO95025 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SEMA3DO95025 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.63■□□□□ 0.73
SEMA3DO95025 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.63■□□□□ 0.73
SEMA3DO95025 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEMA3DO95025 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SEMA3DO95025 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
SEMA3DO95025 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEMA3DO95025 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
SEMA3DO95025 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SEMA3DO95025 MIR5787-201ENST00000611784 55 ntBASIC19.63■□□□□ 0.73
SEMA3DO95025 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms