Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGN4O00479 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.15■□□□□ 0.66
HMGN4O00479 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.15■□□□□ 0.66
HMGN4O00479 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
HMGN4O00479 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
HMGN4O00479 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
HMGN4O00479 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGN4O00479 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGN4O00479 AL512408.1-201ENST00000569378 2000 ntBASIC19.15■□□□□ 0.66
HMGN4O00479 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGN4O00479 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
HMGN4O00479 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGN4O00479 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGN4O00479 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGN4O00479 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.14■□□□□ 0.65
HMGN4O00479 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
HMGN4O00479 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGN4O00479 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGN4O00479 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.14■□□□□ 0.65
HMGN4O00479 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
HMGN4O00479 AL162377.1-201ENST00000618844 1793 ntBASIC19.14■□□□□ 0.65
HMGN4O00479 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGN4O00479 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
HMGN4O00479 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
HMGN4O00479 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
HMGN4O00479 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGN4O00479 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGN4O00479 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGN4O00479 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGN4O00479 KRT18P61-201ENST00000585825 1298 ntBASIC19.13■□□□□ 0.65
HMGN4O00479 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.13■□□□□ 0.65
HMGN4O00479 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.13■□□□□ 0.65
HMGN4O00479 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGN4O00479 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.13■□□□□ 0.65
HMGN4O00479 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
HMGN4O00479 AL391422.3-201ENST00000603791 2761 ntBASIC19.13■□□□□ 0.65
HMGN4O00479 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGN4O00479 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HMGN4O00479 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
HMGN4O00479 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
HMGN4O00479 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.12■□□□□ 0.65
HMGN4O00479 SLC7A5P1-201ENST00000568957 537 ntBASIC19.12■□□□□ 0.65
HMGN4O00479 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGN4O00479 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
HMGN4O00479 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.12■□□□□ 0.65
HMGN4O00479 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.11■□□□□ 0.65
HMGN4O00479 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGN4O00479 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGN4O00479 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.11■□□□□ 0.65
HMGN4O00479 AC243732.1-201ENST00000612648 864 ntBASIC19.11■□□□□ 0.65
HMGN4O00479 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGN4O00479 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
HMGN4O00479 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC19.11■□□□□ 0.65
HMGN4O00479 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
HMGN4O00479 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGN4O00479 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
HMGN4O00479 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.11■□□□□ 0.65
HMGN4O00479 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
HMGN4O00479 RBM17P2-201ENST00000616397 1405 ntBASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms