Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CBX4O00257 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.03■□□□□ 0.96
CBX4O00257 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.03■□□□□ 0.96
CBX4O00257 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.03■□□□□ 0.96
CBX4O00257 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.03■□□□□ 0.96
CBX4O00257 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.03■□□□□ 0.96
CBX4O00257 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.03■□□□□ 0.96
CBX4O00257 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.03■□□□□ 0.96
CBX4O00257 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
CBX4O00257 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CBX4O00257 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CBX4O00257 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CBX4O00257 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.02■□□□□ 0.96
CBX4O00257 MIR4651-201ENST00000582622 73 ntBASIC21.02■□□□□ 0.96
CBX4O00257 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.02■□□□□ 0.96
CBX4O00257 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.02■□□□□ 0.96
CBX4O00257 AC066615.1-201ENST00000640911 628 ntBASIC21.02■□□□□ 0.96
CBX4O00257 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CBX4O00257 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.02■□□□□ 0.96
CBX4O00257 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CBX4O00257 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC21.02■□□□□ 0.95
CBX4O00257 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CBX4O00257 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CBX4O00257 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC21.02■□□□□ 0.95
CBX4O00257 AC005229.4-201ENST00000610085 2198 ntBASIC21.02■□□□□ 0.95
CBX4O00257 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CBX4O00257 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CBX4O00257 BX276092.2-201ENST00000417668 665 ntBASIC21.01■□□□□ 0.95
CBX4O00257 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC21.01■□□□□ 0.95
CBX4O00257 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.01■□□□□ 0.95
CBX4O00257 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC21.01■□□□□ 0.95
CBX4O00257 KRT18P6-201ENST00000555540 1265 ntBASIC21.01■□□□□ 0.95
CBX4O00257 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CBX4O00257 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
CBX4O00257 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 AC011484.1-201ENST00000377652 1995 ntBASIC21.01■□□□□ 0.95
CBX4O00257 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CBX4O00257 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CBX4O00257 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CBX4O00257 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21■□□□□ 0.95
CBX4O00257 MIPEPP3-201ENST00000412105 444 ntBASIC21■□□□□ 0.95
CBX4O00257 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC21■□□□□ 0.95
CBX4O00257 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21■□□□□ 0.95
CBX4O00257 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21■□□□□ 0.95
CBX4O00257 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC21■□□□□ 0.95
CBX4O00257 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21■□□□□ 0.95
CBX4O00257 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CBX4O00257 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CBX4O00257 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CBX4O00257 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CBX4O00257 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21■□□□□ 0.95
CBX4O00257 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21■□□□□ 0.95
CBX4O00257 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21■□□□□ 0.95
CBX4O00257 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CBX4O00257 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CBX4O00257 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CBX4O00257 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.99■□□□□ 0.95
CBX4O00257 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CBX4O00257 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CBX4O00257 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CBX4O00257 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.99■□□□□ 0.95
CBX4O00257 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CBX4O00257 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.99■□□□□ 0.95
CBX4O00257 AL355472.2-201ENST00000422958 438 ntBASIC20.99■□□□□ 0.95
CBX4O00257 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.99■□□□□ 0.95
CBX4O00257 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CBX4O00257 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.99■□□□□ 0.95
CBX4O00257 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
CBX4O00257 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CBX4O00257 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.99■□□□□ 0.95
CBX4O00257 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.98■□□□□ 0.95
CBX4O00257 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.98■□□□□ 0.95
CBX4O00257 AC121338.2-201ENST00000622535 1744 ntBASIC20.98■□□□□ 0.95
CBX4O00257 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
CBX4O00257 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.98■□□□□ 0.95
CBX4O00257 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.98■□□□□ 0.95
CBX4O00257 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CBX4O00257 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CBX4O00257 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CBX4O00257 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms