Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 AC087633.2-202ENST00000565166 1439 ntBASIC20.67■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.67■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 AC060766.5-201ENST00000590539 871 ntBASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 HLA-B-256ENST00000639848 1089 ntBASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
C1QTNF3-AMACRE9PGA6 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 KRT18P29-201ENST00000397031 1267 ntBASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 ITM2C-210ENST00000620962 501 ntBASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 ESRRAP1-201ENST00000400596 1257 ntBASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 UNC93B5-201ENST00000530315 699 ntBASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.63■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.61■□□□□ 0.89
C1QTNF3-AMACRE9PGA6 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms