Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 MIR572-201ENST00000384983 95 ntBASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TRIM49D1C9J1S8 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.59■□□□□ 0.89
TRIM49D1C9J1S8 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.58■□□□□ 0.89
TRIM49D1C9J1S8 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.58■□□□□ 0.88
TRIM49D1C9J1S8 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM49D1C9J1S8 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.88
TRIM49D1C9J1S8 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM49D1C9J1S8 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TRIM49D1C9J1S8 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.58■□□□□ 0.88
TRIM49D1C9J1S8 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 PBX2P1-201ENST00000493219 1291 ntBASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 AP001330.3-201ENST00000520123 633 ntBASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.57■□□□□ 0.88
TRIM49D1C9J1S8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 AC096631.2-201ENST00000436136 790 ntBASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.56■□□□□ 0.88
TRIM49D1C9J1S8 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.55■□□□□ 0.88
TRIM49D1C9J1S8 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms