Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 AC027612.3-201ENST00000413684 1047 ntBASIC21.55■■□□□ 1.04
PCDHA3Q9Y5H8 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHA3Q9Y5H8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHA3Q9Y5H8 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHA3Q9Y5H8 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC21.55■■□□□ 1.04
PCDHA3Q9Y5H8 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.55■■□□□ 1.04
PCDHA3Q9Y5H8 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHA3Q9Y5H8 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 AC005837.3-201ENST00000612163 286 ntBASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 AL391422.3-201ENST00000603791 2761 ntBASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHA3Q9Y5H8 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHA3Q9Y5H8 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 USP39-204ENST00000409766 2033 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 AC010141.2-201ENST00000452426 721 ntBASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
PCDHA3Q9Y5H8 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.03
PCDHA3Q9Y5H8 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PCDHA3Q9Y5H8 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
PCDHA3Q9Y5H8 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
PCDHA3Q9Y5H8 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 AC105265.2-201ENST00000467189 838 ntBASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHA3Q9Y5H8 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 AC245052.3-201ENST00000450182 901 ntBASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.5■■□□□ 1.03
PCDHA3Q9Y5H8 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 64.9 ms