Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 AC024257.2-201ENST00000549699 147 ntBASIC20.38■□□□□ 0.85
MKS1Q9NXB0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
MKS1Q9NXB0 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MKS1Q9NXB0 SMG8-203ENST00000578922 2178 ntBASIC20.36■□□□□ 0.85
MKS1Q9NXB0 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 AL136116.3-201ENST00000402907 1138 ntBASIC20.36■□□□□ 0.85
MKS1Q9NXB0 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.36■□□□□ 0.85
MKS1Q9NXB0 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 TSPY26P-201ENST00000476365 1326 ntBASIC20.35■□□□□ 0.85
MKS1Q9NXB0 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 AL136162.1-201ENST00000607711 1078 ntBASIC20.35■□□□□ 0.85
MKS1Q9NXB0 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
MKS1Q9NXB0 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 AC135279.3-201ENST00000610945 1311 ntBASIC20.34■□□□□ 0.85
MKS1Q9NXB0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 POU5F1P4-201ENST00000413175 1085 ntBASIC20.34■□□□□ 0.85
MKS1Q9NXB0 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 RARRES2P11-201ENST00000635158 484 ntBASIC20.34■□□□□ 0.85
MKS1Q9NXB0 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.34■□□□□ 0.85
MKS1Q9NXB0 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
MKS1Q9NXB0 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 MIR572-201ENST00000384983 95 ntBASIC20.33■□□□□ 0.85
MKS1Q9NXB0 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC20.33■□□□□ 0.85
MKS1Q9NXB0 AC027682.1-201ENST00000562846 899 ntBASIC20.33■□□□□ 0.85
MKS1Q9NXB0 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms