Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 BID-214ENST00000617586 542 ntTSL 5 BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
BLOC1S4Q9NUP1 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 BID-203ENST00000399765 1879 ntTSL 2 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 AC007322.3-201ENST00000426526 701 ntBASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 AC013268.1-206ENST00000638368 961 ntBASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 AC112229.1-201ENST00000639295 961 ntBASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 GAS2L1P2-201ENST00000436355 1356 ntBASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
BLOC1S4Q9NUP1 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 FEM1AP1-201ENST00000431297 1995 ntBASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
BLOC1S4Q9NUP1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 FP700111.2-201ENST00000619190 1892 ntBASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 AC016405.3-201ENST00000607710 860 ntBASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 AL121603.2-201ENST00000557373 2117 ntBASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC22.97■■□□□ 1.27
BLOC1S4Q9NUP1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 AC004911.1-201ENST00000416316 871 ntBASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 AL591742.1-201ENST00000604433 565 ntBASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 AC068338.2-201ENST00000563278 1430 ntBASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
BLOC1S4Q9NUP1 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 VMO1-204ENST00000441199 741 ntTSL 2 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 AC073314.1-201ENST00000568729 2216 ntBASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
BLOC1S4Q9NUP1 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
BLOC1S4Q9NUP1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
BLOC1S4Q9NUP1 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
BLOC1S4Q9NUP1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms