Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.12■□□□□ 0.49
MMP28Q9H239 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC18.12■□□□□ 0.49
MMP28Q9H239 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC18.12■□□□□ 0.49
MMP28Q9H239 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
MMP28Q9H239 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.12■□□□□ 0.49
MMP28Q9H239 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.12■□□□□ 0.49
MMP28Q9H239 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.12■□□□□ 0.49
MMP28Q9H239 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
MMP28Q9H239 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.11■□□□□ 0.49
MMP28Q9H239 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
MMP28Q9H239 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.11■□□□□ 0.49
MMP28Q9H239 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
MMP28Q9H239 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
MMP28Q9H239 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
MMP28Q9H239 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC18.11■□□□□ 0.49
MMP28Q9H239 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
MMP28Q9H239 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 MIR4466-201ENST00000606121 54 ntBASIC18.11■□□□□ 0.49
MMP28Q9H239 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC18.11■□□□□ 0.49
MMP28Q9H239 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.11■□□□□ 0.49
MMP28Q9H239 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 TNXA-203ENST00000507684 2038 ntBASIC18.11■□□□□ 0.49
MMP28Q9H239 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.11■□□□□ 0.49
MMP28Q9H239 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC18.11■□□□□ 0.49
MMP28Q9H239 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC18.11■□□□□ 0.49
MMP28Q9H239 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
MMP28Q9H239 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
MMP28Q9H239 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.1■□□□□ 0.49
MMP28Q9H239 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.1■□□□□ 0.49
MMP28Q9H239 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.1■□□□□ 0.49
MMP28Q9H239 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC18.1■□□□□ 0.49
MMP28Q9H239 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 AC099791.2-201ENST00000605725 427 ntBASIC18.1■□□□□ 0.49
MMP28Q9H239 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
MMP28Q9H239 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.1■□□□□ 0.49
MMP28Q9H239 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.09■□□□□ 0.49
MMP28Q9H239 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC18.09■□□□□ 0.49
MMP28Q9H239 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.09■□□□□ 0.49
MMP28Q9H239 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
MMP28Q9H239 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MMP28Q9H239 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.08■□□□□ 0.49
MMP28Q9H239 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
MMP28Q9H239 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
MMP28Q9H239 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
MMP28Q9H239 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.49
MMP28Q9H239 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.08■□□□□ 0.48
MMP28Q9H239 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
MMP28Q9H239 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.08■□□□□ 0.48
MMP28Q9H239 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
MMP28Q9H239 AC096631.2-201ENST00000436136 790 ntBASIC18.08■□□□□ 0.48
MMP28Q9H239 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms