Protein–RNA interactions for Protein: Q96JG6

VPS50, Syndetin, humanhuman

Predictions only

Length 964 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50Q96JG6 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS50Q96JG6 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
VPS50Q96JG6 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
VPS50Q96JG6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.08■□□□□ 0.8
VPS50Q96JG6 LINC01006-201ENST00000333319 2292 ntBASIC20.07■□□□□ 0.8
VPS50Q96JG6 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.07■□□□□ 0.8
VPS50Q96JG6 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.07■□□□□ 0.8
VPS50Q96JG6 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 AP004607.7-201ENST00000527152 1677 ntBASIC20.06■□□□□ 0.8
VPS50Q96JG6 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.06■□□□□ 0.8
VPS50Q96JG6 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS50Q96JG6 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS50Q96JG6 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS50Q96JG6 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS50Q96JG6 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS50Q96JG6 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS50Q96JG6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS50Q96JG6 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS50Q96JG6 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS50Q96JG6 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS50Q96JG6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS50Q96JG6 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS50Q96JG6 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS50Q96JG6 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS50Q96JG6 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS50Q96JG6 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
VPS50Q96JG6 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS50Q96JG6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS50Q96JG6 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS50Q96JG6 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS50Q96JG6 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms