Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.65■□□□□ 0.9
VPS39Q96JC1 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 AC079140.4-201ENST00000507448 529 ntBASIC20.65■□□□□ 0.9
VPS39Q96JC1 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.65■□□□□ 0.9
VPS39Q96JC1 AC005837.3-201ENST00000612163 286 ntBASIC20.65■□□□□ 0.9
VPS39Q96JC1 AC008175.2-201ENST00000612840 297 ntBASIC20.65■□□□□ 0.9
VPS39Q96JC1 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
VPS39Q96JC1 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS39Q96JC1 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS39Q96JC1 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
VPS39Q96JC1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.64■□□□□ 0.9
VPS39Q96JC1 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS39Q96JC1 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.9
VPS39Q96JC1 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.64■□□□□ 0.9
VPS39Q96JC1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
VPS39Q96JC1 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS39Q96JC1 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
VPS39Q96JC1 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS39Q96JC1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.64■□□□□ 0.89
VPS39Q96JC1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS39Q96JC1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
VPS39Q96JC1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
VPS39Q96JC1 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.64■□□□□ 0.89
VPS39Q96JC1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS39Q96JC1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VPS39Q96JC1 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 AC011484.1-201ENST00000377652 1995 ntBASIC20.63■□□□□ 0.89
VPS39Q96JC1 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS39Q96JC1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS39Q96JC1 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS39Q96JC1 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VPS39Q96JC1 POU5F1P4-201ENST00000413175 1085 ntBASIC20.63■□□□□ 0.89
VPS39Q96JC1 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VPS39Q96JC1 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS39Q96JC1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS39Q96JC1 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS39Q96JC1 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VPS39Q96JC1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS39Q96JC1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 FP700111.2-201ENST00000619190 1892 ntBASIC20.62■□□□□ 0.89
VPS39Q96JC1 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VPS39Q96JC1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.62■□□□□ 0.89
VPS39Q96JC1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
VPS39Q96JC1 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.61■□□□□ 0.89
VPS39Q96JC1 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VPS39Q96JC1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VPS39Q96JC1 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC20.61■□□□□ 0.89
VPS39Q96JC1 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.61■□□□□ 0.89
VPS39Q96JC1 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
VPS39Q96JC1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS39Q96JC1 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS39Q96JC1 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS39Q96JC1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS39Q96JC1 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS39Q96JC1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
VPS39Q96JC1 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS39Q96JC1 AC105265.2-201ENST00000467189 838 ntBASIC20.6■□□□□ 0.89
VPS39Q96JC1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS39Q96JC1 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC20.6■□□□□ 0.89
VPS39Q96JC1 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS39Q96JC1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
VPS39Q96JC1 AC020907.5-201ENST00000624372 1936 ntBASIC20.6■□□□□ 0.89
VPS39Q96JC1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS39Q96JC1 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS39Q96JC1 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS39Q96JC1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VPS39Q96JC1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS39Q96JC1 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS39Q96JC1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.59■□□□□ 0.89
VPS39Q96JC1 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS39Q96JC1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms