Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TTC28Q96AY4 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TTC28Q96AY4 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
TTC28Q96AY4 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
TTC28Q96AY4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TTC28Q96AY4 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.28■■□□□ 1
TTC28Q96AY4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.28■■□□□ 1
TTC28Q96AY4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.28■■□□□ 1
TTC28Q96AY4 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.28■■□□□ 1
TTC28Q96AY4 AC139530.3-201ENST00000620344 690 ntBASIC21.28■■□□□ 1
TTC28Q96AY4 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.28■■□□□ 1
TTC28Q96AY4 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.28■■□□□ 1
TTC28Q96AY4 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.28■■□□□ 1
TTC28Q96AY4 AC061975.6-201ENST00000579045 1553 ntBASIC21.28■■□□□ 1
TTC28Q96AY4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.28■■□□□ 1
TTC28Q96AY4 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.28■■□□□ 1
TTC28Q96AY4 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.27■■□□□ 1
TTC28Q96AY4 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
TTC28Q96AY4 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC21.27■■□□□ 1
TTC28Q96AY4 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.27■■□□□ 1
TTC28Q96AY4 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TTC28Q96AY4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC21.27■□□□□ 0.99
TTC28Q96AY4 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
TTC28Q96AY4 ATP5G1P1-201ENST00000448724 379 ntBASIC21.27■□□□□ 0.99
TTC28Q96AY4 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.27■□□□□ 0.99
TTC28Q96AY4 NAPSB-206ENST00000562112 1266 ntBASIC21.27■□□□□ 0.99
TTC28Q96AY4 C2orf69P3-201ENST00000565542 1120 ntBASIC21.27■□□□□ 0.99
TTC28Q96AY4 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.27■□□□□ 0.99
TTC28Q96AY4 AC005829.2-201ENST00000571422 1056 ntBASIC21.27■□□□□ 0.99
TTC28Q96AY4 KLK8-205ENST00000593490 267 ntTSL 3 BASIC21.27■□□□□ 0.99
TTC28Q96AY4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC21.26■□□□□ 0.99
TTC28Q96AY4 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.26■□□□□ 0.99
TTC28Q96AY4 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC21.26■□□□□ 0.99
TTC28Q96AY4 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.26■□□□□ 0.99
TTC28Q96AY4 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TTC28Q96AY4 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.25■□□□□ 0.99
TTC28Q96AY4 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TTC28Q96AY4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.25■□□□□ 0.99
TTC28Q96AY4 HTR7P1-201ENST00000538670 1336 ntBASIC21.25■□□□□ 0.99
TTC28Q96AY4 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC21.25■□□□□ 0.99
TTC28Q96AY4 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
TTC28Q96AY4 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
TTC28Q96AY4 FAM207BP-201ENST00000447172 505 ntBASIC21.25■□□□□ 0.99
TTC28Q96AY4 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC21.25■□□□□ 0.99
TTC28Q96AY4 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC21.24■□□□□ 0.99
TTC28Q96AY4 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
TTC28Q96AY4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
TTC28Q96AY4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC21.24■□□□□ 0.99
TTC28Q96AY4 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TTC28Q96AY4 AC116562.2-201ENST00000507042 360 ntBASIC21.24■□□□□ 0.99
TTC28Q96AY4 AL121956.5-201ENST00000625261 221 ntBASIC21.24■□□□□ 0.99
TTC28Q96AY4 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TTC28Q96AY4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TTC28Q96AY4 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC21.23■□□□□ 0.99
TTC28Q96AY4 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.23■□□□□ 0.99
TTC28Q96AY4 RN7SL510P-201ENST00000581311 263 ntBASIC21.23■□□□□ 0.99
TTC28Q96AY4 FAM87A-204ENST00000613235 858 ntBASIC21.23■□□□□ 0.99
TTC28Q96AY4 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.23■□□□□ 0.99
TTC28Q96AY4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.23■□□□□ 0.99
TTC28Q96AY4 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC21.23■□□□□ 0.99
TTC28Q96AY4 CDV3P1-201ENST00000471403 739 ntBASIC21.23■□□□□ 0.99
TTC28Q96AY4 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.23■□□□□ 0.99
TTC28Q96AY4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.23■□□□□ 0.99
TTC28Q96AY4 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TTC28Q96AY4 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
TTC28Q96AY4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TTC28Q96AY4 RNF152P1-201ENST00000397754 604 ntBASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms