Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 RNA5SP413-201ENST00000516373 109 ntBASIC19.12■□□□□ 0.65
BEST3Q8N1M1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
BEST3Q8N1M1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.11■□□□□ 0.65
BEST3Q8N1M1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.1■□□□□ 0.65
BEST3Q8N1M1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 TMEM191A-211ENST00000637163 1067 ntBASIC19.1■□□□□ 0.65
BEST3Q8N1M1 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.1■□□□□ 0.65
BEST3Q8N1M1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 LSM12P1-201ENST00000411836 588 ntBASIC19.09■□□□□ 0.65
BEST3Q8N1M1 AL355472.2-201ENST00000422958 438 ntBASIC19.09■□□□□ 0.65
BEST3Q8N1M1 PTPA-214ENST00000423100 988 ntTSL 2 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 DUSP5P2-201ENST00000426873 1033 ntBASIC19.09■□□□□ 0.65
BEST3Q8N1M1 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 AC097658.1-201ENST00000475555 843 ntBASIC19.09■□□□□ 0.65
BEST3Q8N1M1 AC091874.3-201ENST00000512672 1195 ntBASIC19.09■□□□□ 0.65
BEST3Q8N1M1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 AC083880.1-201ENST00000608266 535 ntBASIC19.09■□□□□ 0.65
BEST3Q8N1M1 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
BEST3Q8N1M1 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.08■□□□□ 0.65
BEST3Q8N1M1 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
BEST3Q8N1M1 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BEST3Q8N1M1 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BEST3Q8N1M1 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
BEST3Q8N1M1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
BEST3Q8N1M1 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
BEST3Q8N1M1 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 SERPINH1P1-201ENST00000419794 1249 ntBASIC19.08■□□□□ 0.64
BEST3Q8N1M1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 MYC-209ENST00000641252 345 ntBASIC19.08■□□□□ 0.64
BEST3Q8N1M1 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.08■□□□□ 0.64
BEST3Q8N1M1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms