Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 MMAB-206ENST00000540016 945 ntTSL 3 BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.35■■□□□ 1.17
VPS52Q8N1B4 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 AC006058.3-201ENST00000606217 1069 ntBASIC22.34■■□□□ 1.17
VPS52Q8N1B4 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
VPS52Q8N1B4 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
VPS52Q8N1B4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
VPS52Q8N1B4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
VPS52Q8N1B4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
VPS52Q8N1B4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
VPS52Q8N1B4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC22.33■■□□□ 1.17
VPS52Q8N1B4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.33■■□□□ 1.17
VPS52Q8N1B4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
VPS52Q8N1B4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
VPS52Q8N1B4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.33■■□□□ 1.16
VPS52Q8N1B4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.16
VPS52Q8N1B4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
VPS52Q8N1B4 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.16
VPS52Q8N1B4 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.32■■□□□ 1.16
VPS52Q8N1B4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 AC091799.1-201ENST00000422823 811 ntBASIC22.32■■□□□ 1.16
VPS52Q8N1B4 GCSHP5-201ENST00000443090 522 ntBASIC22.32■■□□□ 1.16
VPS52Q8N1B4 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
VPS52Q8N1B4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 AL355472.2-201ENST00000422958 438 ntBASIC22.31■■□□□ 1.16
VPS52Q8N1B4 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 AC128676.1-201ENST00000454392 318 ntBASIC22.31■■□□□ 1.16
VPS52Q8N1B4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
VPS52Q8N1B4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 UNC93B5-201ENST00000530315 699 ntBASIC22.3■■□□□ 1.16
VPS52Q8N1B4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 AP006294.2-201ENST00000641667 209 ntBASIC22.3■■□□□ 1.16
VPS52Q8N1B4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
VPS52Q8N1B4 KRT17P1-201ENST00000399211 1546 ntBASIC22.3■■□□□ 1.16
VPS52Q8N1B4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms