Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC22.28■■□□□ 1.16
KRT39Q6A163 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
KRT39Q6A163 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC22.28■■□□□ 1.16
KRT39Q6A163 AC007322.4-201ENST00000509611 723 ntBASIC22.28■■□□□ 1.16
KRT39Q6A163 DUX4L16-201ENST00000555130 1264 ntBASIC22.28■■□□□ 1.16
KRT39Q6A163 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC22.28■■□□□ 1.16
KRT39Q6A163 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
KRT39Q6A163 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
KRT39Q6A163 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
KRT39Q6A163 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22.28■■□□□ 1.16
KRT39Q6A163 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
KRT39Q6A163 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC22.27■■□□□ 1.16
KRT39Q6A163 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.27■■□□□ 1.16
KRT39Q6A163 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
KRT39Q6A163 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 AC007322.3-201ENST00000426526 701 ntBASIC22.27■■□□□ 1.16
KRT39Q6A163 GLI3-203ENST00000437480 451 ntTSL 2 BASIC22.27■■□□□ 1.16
KRT39Q6A163 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC22.27■■□□□ 1.16
KRT39Q6A163 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
KRT39Q6A163 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC22.27■■□□□ 1.16
KRT39Q6A163 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.27■■□□□ 1.16
KRT39Q6A163 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC22.27■■□□□ 1.16
KRT39Q6A163 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
KRT39Q6A163 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC22.27■■□□□ 1.15
KRT39Q6A163 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC22.26■■□□□ 1.15
KRT39Q6A163 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
KRT39Q6A163 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.26■■□□□ 1.15
KRT39Q6A163 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
KRT39Q6A163 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
KRT39Q6A163 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC22.26■■□□□ 1.15
KRT39Q6A163 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 SAPCD2P1-201ENST00000395413 1184 ntBASIC22.26■■□□□ 1.15
KRT39Q6A163 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 CDV3P1-201ENST00000471403 739 ntBASIC22.26■■□□□ 1.15
KRT39Q6A163 AL591742.1-201ENST00000604433 565 ntBASIC22.26■■□□□ 1.15
KRT39Q6A163 AC092437.1-201ENST00000624794 1048 ntBASIC22.26■■□□□ 1.15
KRT39Q6A163 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC22.26■■□□□ 1.15
KRT39Q6A163 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
KRT39Q6A163 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
KRT39Q6A163 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
KRT39Q6A163 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
KRT39Q6A163 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
KRT39Q6A163 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
KRT39Q6A163 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
KRT39Q6A163 IKBKGP1-201ENST00000612193 1073 ntBASIC22.25■■□□□ 1.15
KRT39Q6A163 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC22.25■■□□□ 1.15
KRT39Q6A163 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
KRT39Q6A163 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.25■■□□□ 1.15
KRT39Q6A163 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
KRT39Q6A163 ME2-216ENST00000639850 2331 ntTSL 5 BASIC22.25■■□□□ 1.15
KRT39Q6A163 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
KRT39Q6A163 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
KRT39Q6A163 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.25■■□□□ 1.15
KRT39Q6A163 AC027702.1-201ENST00000563810 1770 ntBASIC22.25■■□□□ 1.15
KRT39Q6A163 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC22.24■■□□□ 1.15
KRT39Q6A163 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
KRT39Q6A163 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC22.24■■□□□ 1.15
KRT39Q6A163 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
KRT39Q6A163 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC22.24■■□□□ 1.15
KRT39Q6A163 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC22.24■■□□□ 1.15
KRT39Q6A163 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 AC007225.1-201ENST00000566331 1836 ntBASIC22.24■■□□□ 1.15
KRT39Q6A163 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC22.24■■□□□ 1.15
KRT39Q6A163 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
KRT39Q6A163 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
KRT39Q6A163 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT39Q6A163 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
KRT39Q6A163 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT39Q6A163 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC22.23■■□□□ 1.15
KRT39Q6A163 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
KRT39Q6A163 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
KRT39Q6A163 CNN2P6-201ENST00000439038 900 ntBASIC22.23■■□□□ 1.15
KRT39Q6A163 AL162412.1-201ENST00000567129 965 ntBASIC22.23■■□□□ 1.15
KRT39Q6A163 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms