Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF4P78317 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.1■□□□□ 0.65
RNF4P78317 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.1■□□□□ 0.65
RNF4P78317 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 AC010980.2-201ENST00000587099 1412 ntBASIC19.1■□□□□ 0.65
RNF4P78317 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
RNF4P78317 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.1■□□□□ 0.65
RNF4P78317 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
RNF4P78317 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.1■□□□□ 0.65
RNF4P78317 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.1■□□□□ 0.65
RNF4P78317 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.1■□□□□ 0.65
RNF4P78317 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.1■□□□□ 0.65
RNF4P78317 AF106564.1-201ENST00000607058 2553 ntBASIC19.1■□□□□ 0.65
RNF4P78317 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
RNF4P78317 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
RNF4P78317 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.09■□□□□ 0.65
RNF4P78317 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
RNF4P78317 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.09■□□□□ 0.65
RNF4P78317 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC19.09■□□□□ 0.65
RNF4P78317 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.09■□□□□ 0.65
RNF4P78317 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.09■□□□□ 0.65
RNF4P78317 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC19.09■□□□□ 0.65
RNF4P78317 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.09■□□□□ 0.65
RNF4P78317 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
RNF4P78317 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
RNF4P78317 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
RNF4P78317 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.65
RNF4P78317 AC011484.1-201ENST00000377652 1995 ntBASIC19.08■□□□□ 0.65
RNF4P78317 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RNF4P78317 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RNF4P78317 AL355802.2-201ENST00000402069 882 ntBASIC19.08■□□□□ 0.64
RNF4P78317 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC19.08■□□□□ 0.64
RNF4P78317 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.08■□□□□ 0.64
RNF4P78317 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RNF4P78317 AC100791.3-201ENST00000617619 330 ntBASIC19.08■□□□□ 0.64
RNF4P78317 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC19.08■□□□□ 0.64
RNF4P78317 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF4P78317 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
RNF4P78317 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.08■□□□□ 0.64
RNF4P78317 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.07■□□□□ 0.64
RNF4P78317 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
RNF4P78317 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
RNF4P78317 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
RNF4P78317 MIPEPP3-201ENST00000412105 444 ntBASIC19.07■□□□□ 0.64
RNF4P78317 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.07■□□□□ 0.64
RNF4P78317 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.07■□□□□ 0.64
RNF4P78317 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.07■□□□□ 0.64
RNF4P78317 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
RNF4P78317 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.07■□□□□ 0.64
RNF4P78317 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
RNF4P78317 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.07■□□□□ 0.64
RNF4P78317 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.07■□□□□ 0.64
RNF4P78317 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RNF4P78317 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.06■□□□□ 0.64
RNF4P78317 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
RNF4P78317 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC19.06■□□□□ 0.64
RNF4P78317 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC19.06■□□□□ 0.64
RNF4P78317 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.06■□□□□ 0.64
RNF4P78317 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.06■□□□□ 0.64
RNF4P78317 EMC9-206ENST00000560403 872 ntTSL 2 BASIC19.06■□□□□ 0.64
RNF4P78317 AL138781.1-201ENST00000566567 1274 ntBASIC19.06■□□□□ 0.64
RNF4P78317 AC142086.2-201ENST00000569753 217 ntBASIC19.06■□□□□ 0.64
RNF4P78317 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms