Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.83■□□□□ 0.61
CDH11P55287 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH11P55287 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH11P55287 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH11P55287 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH11P55287 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.83■□□□□ 0.61
CDH11P55287 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH11P55287 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.83■□□□□ 0.6
CDH11P55287 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH11P55287 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH11P55287 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
CDH11P55287 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH11P55287 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH11P55287 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH11P55287 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CDH11P55287 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CDH11P55287 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.83■□□□□ 0.6
CDH11P55287 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.83■□□□□ 0.6
CDH11P55287 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH11P55287 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH11P55287 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.82■□□□□ 0.6
CDH11P55287 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.82■□□□□ 0.6
CDH11P55287 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.82■□□□□ 0.6
CDH11P55287 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.82■□□□□ 0.6
CDH11P55287 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CDH11P55287 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH11P55287 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.82■□□□□ 0.6
CDH11P55287 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 AL137784.2-201ENST00000607332 1000 ntBASIC18.82■□□□□ 0.6
CDH11P55287 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.82■□□□□ 0.6
CDH11P55287 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
CDH11P55287 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH11P55287 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
CDH11P55287 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.82■□□□□ 0.6
CDH11P55287 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 ADM-207ENST00000530439 1839 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH11P55287 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CDH11P55287 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.81■□□□□ 0.6
CDH11P55287 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.81■□□□□ 0.6
CDH11P55287 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CDH11P55287 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH11P55287 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC18.81■□□□□ 0.6
CDH11P55287 AC022517.1-201ENST00000592429 346 ntBASIC18.81■□□□□ 0.6
CDH11P55287 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CDH11P55287 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.81■□□□□ 0.6
CDH11P55287 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CDH11P55287 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CDH11P55287 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH11P55287 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDH11P55287 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDH11P55287 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDH11P55287 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CDH11P55287 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CDH11P55287 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH11P55287 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH11P55287 NTF6G-201ENST00000591094 616 ntBASIC18.8■□□□□ 0.6
CDH11P55287 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.8■□□□□ 0.6
CDH11P55287 IKBKGP1-201ENST00000612193 1073 ntBASIC18.8■□□□□ 0.6
CDH11P55287 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH11P55287 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC18.8■□□□□ 0.6
CDH11P55287 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC18.8■□□□□ 0.6
CDH11P55287 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDH11P55287 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDH11P55287 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 68.9 ms