Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
COL5A3P25940 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL5A3P25940 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC26.32■■□□□ 1.8
COL5A3P25940 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 MIR1224-201ENST00000408193 85 ntBASIC26.31■■□□□ 1.8
COL5A3P25940 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 AC012306.2-201ENST00000609350 630 ntBASIC26.31■■□□□ 1.8
COL5A3P25940 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
COL5A3P25940 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC26.31■■□□□ 1.8
COL5A3P25940 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC26.31■■□□□ 1.8
COL5A3P25940 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC26.31■■□□□ 1.8
COL5A3P25940 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.31■■□□□ 1.8
COL5A3P25940 KRASP1-201ENST00000407852 552 ntBASIC26.31■■□□□ 1.8
COL5A3P25940 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
COL5A3P25940 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC26.31■■□□□ 1.8
COL5A3P25940 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
COL5A3P25940 PPOX-219ENST00000544598 813 ntTSL 2 BASIC26.31■■□□□ 1.8
COL5A3P25940 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC26.31■■□□□ 1.8
COL5A3P25940 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
COL5A3P25940 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL5A3P25940 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL5A3P25940 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC26.3■■□□□ 1.8
COL5A3P25940 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL5A3P25940 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL5A3P25940 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL5A3P25940 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL5A3P25940 AC087499.1-201ENST00000418141 1075 ntBASIC26.3■■□□□ 1.8
COL5A3P25940 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC26.3■■□□□ 1.8
COL5A3P25940 AC005829.2-201ENST00000571422 1056 ntBASIC26.3■■□□□ 1.8
COL5A3P25940 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC26.3■■□□□ 1.8
COL5A3P25940 AL023875.1-201ENST00000640777 796 ntBASIC26.3■■□□□ 1.8
COL5A3P25940 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC26.3■■□□□ 1.8
COL5A3P25940 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC26.3■■□□□ 1.8
COL5A3P25940 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL5A3P25940 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.29■■□□□ 1.8
COL5A3P25940 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
COL5A3P25940 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL5A3P25940 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
COL5A3P25940 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL5A3P25940 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC26.29■■□□□ 1.8
COL5A3P25940 RER1-204ENST00000378518 522 ntTSL 3 BASIC26.29■■□□□ 1.8
COL5A3P25940 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC26.29■■□□□ 1.8
COL5A3P25940 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
COL5A3P25940 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
COL5A3P25940 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL5A3P25940 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
COL5A3P25940 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
COL5A3P25940 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
COL5A3P25940 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC26.28■■□□□ 1.8
COL5A3P25940 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC26.28■■□□□ 1.8
COL5A3P25940 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC26.28■■□□□ 1.8
COL5A3P25940 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC26.28■■□□□ 1.8
COL5A3P25940 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC26.28■■□□□ 1.8
COL5A3P25940 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC26.28■■□□□ 1.8
COL5A3P25940 ABHD17AP6-201ENST00000458502 1044 ntBASIC26.28■■□□□ 1.8
COL5A3P25940 PENK-204ENST00000518770 863 ntTSL 2 BASIC26.28■■□□□ 1.8
COL5A3P25940 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC26.28■■□□□ 1.8
COL5A3P25940 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC26.28■■□□□ 1.8
COL5A3P25940 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
COL5A3P25940 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC26.28■■□□□ 1.8
COL5A3P25940 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL5A3P25940 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL5A3P25940 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
COL5A3P25940 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.27■■□□□ 1.8
COL5A3P25940 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL5A3P25940 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
COL5A3P25940 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL5A3P25940 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC26.26■■□□□ 1.8
COL5A3P25940 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL5A3P25940 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
COL5A3P25940 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC26.26■■□□□ 1.79
COL5A3P25940 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC26.26■■□□□ 1.79
COL5A3P25940 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC26.26■■□□□ 1.79
COL5A3P25940 C2orf69P4-201ENST00000565394 541 ntBASIC26.26■■□□□ 1.79
COL5A3P25940 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC26.26■■□□□ 1.79
COL5A3P25940 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
COL5A3P25940 RCN1P1-201ENST00000400413 996 ntBASIC26.25■■□□□ 1.79
COL5A3P25940 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC26.25■■□□□ 1.79
COL5A3P25940 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC26.25■■□□□ 1.79
COL5A3P25940 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.25■■□□□ 1.79
COL5A3P25940 MIR4785-201ENST00000585005 73 ntBASIC26.25■■□□□ 1.79
COL5A3P25940 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC26.25■■□□□ 1.79
COL5A3P25940 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC26.25■■□□□ 1.79
COL5A3P25940 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL5A3P25940 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
COL5A3P25940 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.25■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms