Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
USF1P22415 CD44-222ENST00000526025 1052 ntTSL 2 BASIC17.46■□□□□ 0.39
USF1P22415 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
USF1P22415 AP006294.2-201ENST00000641667 209 ntBASIC17.46■□□□□ 0.39
USF1P22415 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
USF1P22415 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC17.46■□□□□ 0.39
USF1P22415 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.38
USF1P22415 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC17.46■□□□□ 0.38
USF1P22415 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.38
USF1P22415 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 WWC2-AS2-201ENST00000578387 2183 ntBASIC17.45■□□□□ 0.38
USF1P22415 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC17.45■□□□□ 0.38
USF1P22415 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC17.45■□□□□ 0.38
USF1P22415 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.45■□□□□ 0.38
USF1P22415 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.45■□□□□ 0.38
USF1P22415 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.45■□□□□ 0.38
USF1P22415 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC17.45■□□□□ 0.38
USF1P22415 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.45■□□□□ 0.38
USF1P22415 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC17.45■□□□□ 0.38
USF1P22415 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC17.45■□□□□ 0.38
USF1P22415 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
USF1P22415 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.44■□□□□ 0.38
USF1P22415 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
USF1P22415 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 GAS7-202ENST00000396115 929 ntTSL 5 BASIC17.44■□□□□ 0.38
USF1P22415 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.44■□□□□ 0.38
USF1P22415 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.44■□□□□ 0.38
USF1P22415 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.44■□□□□ 0.38
USF1P22415 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.44■□□□□ 0.38
USF1P22415 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC17.44■□□□□ 0.38
USF1P22415 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC17.44■□□□□ 0.38
USF1P22415 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
USF1P22415 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
USF1P22415 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.44■□□□□ 0.38
USF1P22415 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC17.43■□□□□ 0.38
USF1P22415 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.43■□□□□ 0.38
USF1P22415 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
USF1P22415 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.43■□□□□ 0.38
USF1P22415 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.43■□□□□ 0.38
USF1P22415 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
USF1P22415 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
USF1P22415 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.43■□□□□ 0.38
USF1P22415 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.43■□□□□ 0.38
USF1P22415 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.43■□□□□ 0.38
USF1P22415 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC17.43■□□□□ 0.38
USF1P22415 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
USF1P22415 INO80E-214ENST00000620599 515 ntTSL 2 BASIC17.43■□□□□ 0.38
USF1P22415 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.43■□□□□ 0.38
USF1P22415 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
USF1P22415 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.42■□□□□ 0.38
USF1P22415 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC17.42■□□□□ 0.38
USF1P22415 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.42■□□□□ 0.38
USF1P22415 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.42■□□□□ 0.38
USF1P22415 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC17.42■□□□□ 0.38
USF1P22415 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 MMAB-206ENST00000540016 945 ntTSL 3 BASIC17.42■□□□□ 0.38
USF1P22415 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC17.42■□□□□ 0.38
USF1P22415 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 AC006058.3-201ENST00000606217 1069 ntBASIC17.42■□□□□ 0.38
USF1P22415 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
USF1P22415 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms