Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
HOXC4P09017 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC4P09017 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC4P09017 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC4P09017 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC4P09017 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC4P09017 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC4P09017 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HOXC4P09017 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.22■□□□□ 0.83
HOXC4P09017 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC4P09017 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC4P09017 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.21■□□□□ 0.83
HOXC4P09017 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.21■□□□□ 0.83
HOXC4P09017 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
HOXC4P09017 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.21■□□□□ 0.83
HOXC4P09017 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXC4P09017 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 AC060766.5-201ENST00000590539 871 ntBASIC20.21■□□□□ 0.83
HOXC4P09017 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC20.21■□□□□ 0.83
HOXC4P09017 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
HOXC4P09017 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.2■□□□□ 0.82
HOXC4P09017 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC4P09017 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC4P09017 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC4P09017 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC4P09017 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC4P09017 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC4P09017 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HOXC4P09017 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.2■□□□□ 0.82
HOXC4P09017 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.2■□□□□ 0.82
HOXC4P09017 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.2■□□□□ 0.82
HOXC4P09017 UNC93B5-201ENST00000530315 699 ntBASIC20.2■□□□□ 0.82
HOXC4P09017 C2orf69P4-201ENST00000565394 541 ntBASIC20.2■□□□□ 0.82
HOXC4P09017 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.2■□□□□ 0.82
HOXC4P09017 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
HOXC4P09017 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
HOXC4P09017 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
HOXC4P09017 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.19■□□□□ 0.82
HOXC4P09017 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC4P09017 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC4P09017 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
HOXC4P09017 AL049796.1-201ENST00000565336 1766 ntBASIC20.19■□□□□ 0.82
HOXC4P09017 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC4P09017 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.19■□□□□ 0.82
HOXC4P09017 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
HOXC4P09017 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC4P09017 AL356652.1-201ENST00000615962 565 ntBASIC20.19■□□□□ 0.82
HOXC4P09017 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC4P09017 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
HOXC4P09017 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
HOXC4P09017 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
HOXC4P09017 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
HOXC4P09017 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.18■□□□□ 0.82
HOXC4P09017 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
HOXC4P09017 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.18■□□□□ 0.82
HOXC4P09017 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.18■□□□□ 0.82
HOXC4P09017 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.18■□□□□ 0.82
HOXC4P09017 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 ADM-205ENST00000528544 586 ntTSL 2 BASIC20.18■□□□□ 0.82
HOXC4P09017 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.18■□□□□ 0.82
HOXC4P09017 ITM2C-210ENST00000620962 501 ntBASIC20.18■□□□□ 0.82
HOXC4P09017 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
HOXC4P09017 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.18■□□□□ 0.82
HOXC4P09017 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC4P09017 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
HOXC4P09017 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC4P09017 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC4P09017 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC4P09017 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC4P09017 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC20.17■□□□□ 0.82
HOXC4P09017 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
HOXC4P09017 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
HOXC4P09017 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.17■□□□□ 0.82
HOXC4P09017 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms