Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
ABCA1O95477 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
ABCA1O95477 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC17.24■□□□□ 0.35
ABCA1O95477 FAM197Y4-202ENST00000622692 608 ntBASIC17.24■□□□□ 0.35
ABCA1O95477 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC17.24■□□□□ 0.35
ABCA1O95477 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.24■□□□□ 0.35
ABCA1O95477 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.24■□□□□ 0.35
ABCA1O95477 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC17.24■□□□□ 0.35
ABCA1O95477 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
ABCA1O95477 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
ABCA1O95477 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
ABCA1O95477 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC17.24■□□□□ 0.35
ABCA1O95477 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
ABCA1O95477 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC17.24■□□□□ 0.35
ABCA1O95477 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 CYP2T3P-201ENST00000601990 817 ntBASIC17.24■□□□□ 0.35
ABCA1O95477 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 AC100791.3-201ENST00000617619 330 ntBASIC17.24■□□□□ 0.35
ABCA1O95477 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
ABCA1O95477 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC17.23■□□□□ 0.35
ABCA1O95477 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.23■□□□□ 0.35
ABCA1O95477 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC17.23■□□□□ 0.35
ABCA1O95477 Z99916.2-201ENST00000604037 246 ntBASIC17.23■□□□□ 0.35
ABCA1O95477 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
ABCA1O95477 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
ABCA1O95477 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
ABCA1O95477 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC17.23■□□□□ 0.35
ABCA1O95477 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
ABCA1O95477 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
ABCA1O95477 KRT17P3-201ENST00000420566 1262 ntBASIC17.23■□□□□ 0.35
ABCA1O95477 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
ABCA1O95477 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
ABCA1O95477 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC17.22■□□□□ 0.35
ABCA1O95477 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC17.22■□□□□ 0.35
ABCA1O95477 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA1O95477 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC17.22■□□□□ 0.35
ABCA1O95477 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA1O95477 LINC01023-201ENST00000606054 436 ntBASIC17.22■□□□□ 0.35
ABCA1O95477 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA1O95477 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
ABCA1O95477 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
ABCA1O95477 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.22■□□□□ 0.35
ABCA1O95477 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
ABCA1O95477 AC139530.1-201ENST00000575312 1977 ntBASIC17.21■□□□□ 0.35
ABCA1O95477 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA1O95477 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA1O95477 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.21■□□□□ 0.35
ABCA1O95477 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA1O95477 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA1O95477 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA1O95477 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA1O95477 AC233263.1-201ENST00000578059 224 ntBASIC17.21■□□□□ 0.35
ABCA1O95477 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA1O95477 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC17.21■□□□□ 0.35
ABCA1O95477 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
ABCA1O95477 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
ABCA1O95477 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC17.21■□□□□ 0.35
ABCA1O95477 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC17.21■□□□□ 0.35
ABCA1O95477 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
ABCA1O95477 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.21■□□□□ 0.34
ABCA1O95477 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.21■□□□□ 0.34
ABCA1O95477 POM121L13P-201ENST00000422362 380 ntBASIC17.21■□□□□ 0.34
ABCA1O95477 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.21■□□□□ 0.34
ABCA1O95477 ABHD17AP6-201ENST00000458502 1044 ntBASIC17.21■□□□□ 0.34
ABCA1O95477 MAX-217ENST00000557277 728 ntTSL 3 BASIC17.21■□□□□ 0.34
ABCA1O95477 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.21■□□□□ 0.34
ABCA1O95477 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.34
ABCA1O95477 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.34
ABCA1O95477 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms