Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 AL049796.1-201ENST00000565336 1766 ntBASIC23.23■■□□□ 1.31
CHMP2AO43633 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC23.23■■□□□ 1.31
CHMP2AO43633 FAM21FP-204ENST00000608637 956 ntBASIC23.23■■□□□ 1.31
CHMP2AO43633 PFKL-212ENST00000628044 129 ntTSL 3 BASIC23.23■■□□□ 1.31
CHMP2AO43633 AC007375.3-201ENST00000600936 2314 ntBASIC23.23■■□□□ 1.31
CHMP2AO43633 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC23.23■■□□□ 1.31
CHMP2AO43633 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CHMP2AO43633 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
CHMP2AO43633 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.23■■□□□ 1.31
CHMP2AO43633 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.23■■□□□ 1.31
CHMP2AO43633 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
CHMP2AO43633 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.22■■□□□ 1.31
CHMP2AO43633 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.22■■□□□ 1.31
CHMP2AO43633 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.22■■□□□ 1.31
CHMP2AO43633 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CHMP2AO43633 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHMP2AO43633 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHMP2AO43633 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CHMP2AO43633 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.22■■□□□ 1.31
CHMP2AO43633 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.22■■□□□ 1.31
CHMP2AO43633 MARS-234ENST00000630571 216 ntTSL 5 BASIC23.22■■□□□ 1.31
CHMP2AO43633 MARS-235ENST00000630803 183 ntTSL 3 BASIC23.22■■□□□ 1.31
CHMP2AO43633 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHMP2AO43633 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHMP2AO43633 AC010980.2-201ENST00000587099 1412 ntBASIC23.22■■□□□ 1.31
CHMP2AO43633 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CHMP2AO43633 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
CHMP2AO43633 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CHMP2AO43633 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHMP2AO43633 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CHMP2AO43633 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC23.21■■□□□ 1.31
CHMP2AO43633 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.21■■□□□ 1.31
CHMP2AO43633 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.21■■□□□ 1.31
CHMP2AO43633 AC098934.4-201ENST00000564127 592 ntBASIC23.21■■□□□ 1.31
CHMP2AO43633 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHMP2AO43633 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHMP2AO43633 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC23.21■■□□□ 1.31
CHMP2AO43633 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
CHMP2AO43633 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHMP2AO43633 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHMP2AO43633 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC23.21■■□□□ 1.31
CHMP2AO43633 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CHMP2AO43633 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CHMP2AO43633 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CHMP2AO43633 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC23.2■■□□□ 1.3
CHMP2AO43633 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CHMP2AO43633 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.2■■□□□ 1.3
CHMP2AO43633 AL512625.2-201ENST00000417533 625 ntBASIC23.2■■□□□ 1.3
CHMP2AO43633 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CHMP2AO43633 AL355472.2-201ENST00000422958 438 ntBASIC23.2■■□□□ 1.3
CHMP2AO43633 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.2■■□□□ 1.3
CHMP2AO43633 DENND3-207ENST00000518347 850 ntTSL 2 BASIC23.2■■□□□ 1.3
CHMP2AO43633 EMC9-206ENST00000560403 872 ntTSL 2 BASIC23.2■■□□□ 1.3
CHMP2AO43633 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CHMP2AO43633 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CHMP2AO43633 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CHMP2AO43633 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC23.2■■□□□ 1.3
CHMP2AO43633 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CHMP2AO43633 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CHMP2AO43633 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CHMP2AO43633 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CHMP2AO43633 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC23.19■■□□□ 1.3
CHMP2AO43633 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CHMP2AO43633 AC005229.4-201ENST00000610085 2198 ntBASIC23.19■■□□□ 1.3
CHMP2AO43633 MIPEPP3-201ENST00000412105 444 ntBASIC23.19■■□□□ 1.3
CHMP2AO43633 BX276092.2-201ENST00000417668 665 ntBASIC23.19■■□□□ 1.3
CHMP2AO43633 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.19■■□□□ 1.3
CHMP2AO43633 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC23.19■■□□□ 1.3
CHMP2AO43633 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC23.19■■□□□ 1.3
CHMP2AO43633 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC23.19■■□□□ 1.3
CHMP2AO43633 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.19■■□□□ 1.3
CHMP2AO43633 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.18■■□□□ 1.3
CHMP2AO43633 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CHMP2AO43633 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CHMP2AO43633 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CHMP2AO43633 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC23.18■■□□□ 1.3
CHMP2AO43633 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.18■■□□□ 1.3
CHMP2AO43633 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.18■■□□□ 1.3
CHMP2AO43633 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.18■■□□□ 1.3
CHMP2AO43633 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CHMP2AO43633 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.17■■□□□ 1.3
CHMP2AO43633 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.17■■□□□ 1.3
CHMP2AO43633 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.17■■□□□ 1.3
CHMP2AO43633 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.17■■□□□ 1.3
CHMP2AO43633 APTR-205ENST00000447009 902 ntTSL 2 BASIC23.17■■□□□ 1.3
CHMP2AO43633 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.17■■□□□ 1.3
CHMP2AO43633 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.17■■□□□ 1.3
CHMP2AO43633 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC23.17■■□□□ 1.3
CHMP2AO43633 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CHMP2AO43633 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CHMP2AO43633 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CHMP2AO43633 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CHMP2AO43633 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms