Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CDX4O14627 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.08■□□□□ 0.81
CDX4O14627 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.08■□□□□ 0.81
CDX4O14627 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
CDX4O14627 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CDX4O14627 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
CDX4O14627 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.81
CDX4O14627 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.81
CDX4O14627 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.08■□□□□ 0.8
CDX4O14627 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.08■□□□□ 0.8
CDX4O14627 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.07■□□□□ 0.8
CDX4O14627 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX4O14627 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX4O14627 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CDX4O14627 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX4O14627 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.07■□□□□ 0.8
CDX4O14627 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
CDX4O14627 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CDX4O14627 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CDX4O14627 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.07■□□□□ 0.8
CDX4O14627 AC026471.5-201ENST00000615068 467 ntBASIC20.07■□□□□ 0.8
CDX4O14627 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.07■□□□□ 0.8
CDX4O14627 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.07■□□□□ 0.8
CDX4O14627 AC026471.6-201ENST00000622954 1905 ntBASIC20.07■□□□□ 0.8
CDX4O14627 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX4O14627 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.06■□□□□ 0.8
CDX4O14627 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.06■□□□□ 0.8
CDX4O14627 MMP23A-201ENST00000234610 1017 ntBASIC20.06■□□□□ 0.8
CDX4O14627 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.06■□□□□ 0.8
CDX4O14627 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.06■□□□□ 0.8
CDX4O14627 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.06■□□□□ 0.8
CDX4O14627 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
CDX4O14627 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.06■□□□□ 0.8
CDX4O14627 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC20.06■□□□□ 0.8
CDX4O14627 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX4O14627 AP003071.4-201ENST00000562276 1284 ntBASIC20.06■□□□□ 0.8
CDX4O14627 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX4O14627 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX4O14627 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
CDX4O14627 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.05■□□□□ 0.8
CDX4O14627 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.05■□□□□ 0.8
CDX4O14627 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 AL049597.2-201ENST00000565575 961 ntBASIC20.05■□□□□ 0.8
CDX4O14627 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CDX4O14627 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 AL590326.2-201ENST00000625139 305 ntBASIC20.05■□□□□ 0.8
CDX4O14627 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.05■□□□□ 0.8
CDX4O14627 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
CDX4O14627 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX4O14627 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC20.04■□□□□ 0.8
CDX4O14627 AC116050.2-201ENST00000612102 1779 ntBASIC20.04■□□□□ 0.8
CDX4O14627 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.04■□□□□ 0.8
CDX4O14627 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC20.04■□□□□ 0.8
CDX4O14627 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.04■□□□□ 0.8
CDX4O14627 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CDX4O14627 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.04■□□□□ 0.8
CDX4O14627 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.04■□□□□ 0.8
CDX4O14627 AC092865.7-201ENST00000641832 219 ntBASIC20.04■□□□□ 0.8
CDX4O14627 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC20.04■□□□□ 0.8
CDX4O14627 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDX4O14627 AC068473.5-201ENST00000616428 2072 ntBASIC20.04■□□□□ 0.8
CDX4O14627 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.03■□□□□ 0.8
CDX4O14627 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms