Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SLC28A1O00337 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
SLC28A1O00337 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.84■□□□□ 0.77
SLC28A1O00337 AC245052.3-201ENST00000450182 901 ntBASIC19.84■□□□□ 0.77
SLC28A1O00337 AC105265.2-201ENST00000467189 838 ntBASIC19.84■□□□□ 0.77
SLC28A1O00337 RARRES2P11-201ENST00000635158 484 ntBASIC19.84■□□□□ 0.77
SLC28A1O00337 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
SLC28A1O00337 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC19.84■□□□□ 0.77
SLC28A1O00337 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.84■□□□□ 0.77
SLC28A1O00337 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SLC28A1O00337 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SLC28A1O00337 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.83■□□□□ 0.77
SLC28A1O00337 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
SLC28A1O00337 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
SLC28A1O00337 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SLC28A1O00337 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.83■□□□□ 0.77
SLC28A1O00337 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.83■□□□□ 0.77
SLC28A1O00337 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC19.83■□□□□ 0.76
SLC28A1O00337 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC28A1O00337 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SLC28A1O00337 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.83■□□□□ 0.76
SLC28A1O00337 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
SLC28A1O00337 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC28A1O00337 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SLC28A1O00337 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
SLC28A1O00337 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC28A1O00337 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SLC28A1O00337 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
SLC28A1O00337 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
SLC28A1O00337 LINC02228-203ENST00000641970 1355 ntBASIC19.83■□□□□ 0.76
SLC28A1O00337 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC28A1O00337 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.82■□□□□ 0.76
SLC28A1O00337 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SLC28A1O00337 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC28A1O00337 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
SLC28A1O00337 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
SLC28A1O00337 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC28A1O00337 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC28A1O00337 AC010141.2-201ENST00000452426 721 ntBASIC19.82■□□□□ 0.76
SLC28A1O00337 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.82■□□□□ 0.76
SLC28A1O00337 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.82■□□□□ 0.76
SLC28A1O00337 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC19.82■□□□□ 0.76
SLC28A1O00337 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SLC28A1O00337 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
SLC28A1O00337 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC28A1O00337 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SLC28A1O00337 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.82■□□□□ 0.76
SLC28A1O00337 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.81■□□□□ 0.76
SLC28A1O00337 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC28A1O00337 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC28A1O00337 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC28A1O00337 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC28A1O00337 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.81■□□□□ 0.76
SLC28A1O00337 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.81■□□□□ 0.76
SLC28A1O00337 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SLC28A1O00337 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SLC28A1O00337 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC28A1O00337 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC19.81■□□□□ 0.76
SLC28A1O00337 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SLC28A1O00337 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
SLC28A1O00337 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC19.81■□□□□ 0.76
SLC28A1O00337 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC28A1O00337 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.8■□□□□ 0.76
SLC28A1O00337 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC28A1O00337 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.8■□□□□ 0.76
SLC28A1O00337 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.8■□□□□ 0.76
SLC28A1O00337 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
SLC28A1O00337 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC28A1O00337 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.8■□□□□ 0.76
SLC28A1O00337 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SLC28A1O00337 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.79■□□□□ 0.76
SLC28A1O00337 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms