Protein–RNA interactions for Protein: A6NIU2

LINC01549, Putative uncharacterized protein encoded by LINC01549, humanhuman

Predictions only

Length 74 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01549A6NIU2 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01549A6NIU2 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 AFG3L1P-217ENST00000557444 2447 ntBASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01549A6NIU2 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 BID-203ENST00000399765 1879 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 CLTA-206ENST00000466396 695 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 DUX4L18-201ENST00000553347 1267 ntBASIC14.63□□□□□ -0.07
LINC01549A6NIU2 TK2-216ENST00000564917 1156 ntTSL 3 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01549A6NIU2 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 AP004607.7-201ENST00000527152 1677 ntBASIC14.62□□□□□ -0.07
LINC01549A6NIU2 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 PALM-207ENST00000590161 2137 ntTSL 4 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 RARRES2P2-201ENST00000394842 485 ntBASIC14.62□□□□□ -0.07
LINC01549A6NIU2 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 AC026471.1-201ENST00000564629 3026 ntBASIC14.62□□□□□ -0.07
LINC01549A6NIU2 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01549A6NIU2 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC14.61□□□□□ -0.07
LINC01549A6NIU2 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC01549A6NIU2 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LINC01549A6NIU2 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC14.61□□□□□ -0.07
LINC01549A6NIU2 AC021242.3-201ENST00000607598 1377 ntBASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms