Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
USH1CQ9Y6N9 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 AL512408.1-201ENST00000569378 2000 ntBASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
USH1CQ9Y6N9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
USH1CQ9Y6N9 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
USH1CQ9Y6N9 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 UNC93B8-201ENST00000511903 705 ntBASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 AC099778.1-201ENST00000568593 1911 ntBASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
USH1CQ9Y6N9 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 BID-203ENST00000399765 1879 ntTSL 2 BASIC20.5■□□□□ 0.87
USH1CQ9Y6N9 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 AP006587.3-201ENST00000525742 1516 ntBASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC20.49■□□□□ 0.87
USH1CQ9Y6N9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms