Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC23.77■■□□□ 1.4
PCDHA1Q9Y5I3 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 AL355472.2-201ENST00000422958 438 ntBASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 AC092118.2-201ENST00000613495 667 ntBASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 WWC2-AS2-201ENST00000578387 2183 ntBASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
PCDHA1Q9Y5I3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC23.75■■□□□ 1.39
PCDHA1Q9Y5I3 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
PCDHA1Q9Y5I3 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 CYP2T3P-201ENST00000601990 817 ntBASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
PCDHA1Q9Y5I3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 MCRIP2P1-201ENST00000394346 511 ntBASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.72■■□□□ 1.39
PCDHA1Q9Y5I3 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 KRT17P1-201ENST00000399211 1546 ntBASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.71■■□□□ 1.39
PCDHA1Q9Y5I3 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.71■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms