Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 CBFB-203ENST00000561924 584 ntTSL 5 BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SHANK1Q9Y566 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK1Q9Y566 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SHANK1Q9Y566 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 REXO1L12P-201ENST00000622156 912 ntBASIC18.76■□□□□ 0.59
SHANK1Q9Y566 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 FAM21FP-204ENST00000608637 956 ntBASIC18.76■□□□□ 0.59
SHANK1Q9Y566 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SHANK1Q9Y566 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 MCRIP2P1-201ENST00000394346 511 ntBASIC18.75■□□□□ 0.59
SHANK1Q9Y566 AL355075.4-201ENST00000554988 638 ntBASIC18.75■□□□□ 0.59
SHANK1Q9Y566 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 AC087742.1-201ENST00000575880 1738 ntBASIC18.75■□□□□ 0.59
SHANK1Q9Y566 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.75■□□□□ 0.59
SHANK1Q9Y566 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.75■□□□□ 0.59
SHANK1Q9Y566 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 SOX15-203ENST00000570788 1093 ntBASIC18.75■□□□□ 0.59
SHANK1Q9Y566 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SHANK1Q9Y566 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC18.74■□□□□ 0.59
SHANK1Q9Y566 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SHANK1Q9Y566 AC139530.1-201ENST00000575312 1977 ntBASIC18.73■□□□□ 0.59
SHANK1Q9Y566 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SHANK1Q9Y566 AC007322.3-201ENST00000426526 701 ntBASIC18.72■□□□□ 0.59
SHANK1Q9Y566 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms