Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 AP005212.1-201ENST00000581547 1997 ntBASIC18.43■□□□□ 0.54
VSX1Q9NZR4 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 YBX1P1-201ENST00000445822 960 ntBASIC18.43■□□□□ 0.54
VSX1Q9NZR4 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 TERF1P2-201ENST00000583350 1212 ntBASIC18.43■□□□□ 0.54
VSX1Q9NZR4 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 AC007225.1-201ENST00000566331 1836 ntBASIC18.43■□□□□ 0.54
VSX1Q9NZR4 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VSX1Q9NZR4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4L2-201ENST00000561772 1275 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 AC120498.10-201ENST00000621827 505 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4L6-201ENST00000626483 1275 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4L1-201ENST00000627662 1275 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4L8-201ENST00000629013 1275 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4L3-201ENST00000630187 1275 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4L7-201ENST00000630678 1275 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 DUX4L5-201ENST00000630834 1275 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 RARRES2P11-201ENST00000635158 484 ntBASIC18.42■□□□□ 0.54
VSX1Q9NZR4 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VSX1Q9NZR4 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VSX1Q9NZR4 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 AC104187.1-201ENST00000607510 612 ntBASIC18.4■□□□□ 0.54
VSX1Q9NZR4 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 AC073130.3-201ENST00000624389 2278 ntBASIC18.4■□□□□ 0.54
VSX1Q9NZR4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VSX1Q9NZR4 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VSX1Q9NZR4 AC073314.1-201ENST00000568729 2216 ntBASIC18.39■□□□□ 0.54
VSX1Q9NZR4 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
VSX1Q9NZR4 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 AC245052.3-201ENST00000450182 901 ntBASIC18.39■□□□□ 0.53
VSX1Q9NZR4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
VSX1Q9NZR4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms