Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC18.83■□□□□ 0.6
CLN6Q9NWW5 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLN6Q9NWW5 USP39-204ENST00000409766 2033 ntTSL 2 BASIC18.83■□□□□ 0.6
CLN6Q9NWW5 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.83■□□□□ 0.6
CLN6Q9NWW5 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC18.83■□□□□ 0.6
CLN6Q9NWW5 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 AL162377.1-201ENST00000618844 1793 ntBASIC18.82■□□□□ 0.6
CLN6Q9NWW5 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLN6Q9NWW5 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 AL138724.1-201ENST00000606771 1088 ntBASIC18.81■□□□□ 0.6
CLN6Q9NWW5 AL035685.1-201ENST00000636663 812 ntBASIC18.81■□□□□ 0.6
CLN6Q9NWW5 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.81■□□□□ 0.6
CLN6Q9NWW5 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 FP700111.2-201ENST00000619190 1892 ntBASIC18.8■□□□□ 0.6
CLN6Q9NWW5 AL512408.1-201ENST00000569378 2000 ntBASIC18.8■□□□□ 0.6
CLN6Q9NWW5 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.8■□□□□ 0.6
CLN6Q9NWW5 QDPR-206ENST00000508623 601 ntTSL 3 BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 AP005435.1-201ENST00000529293 1178 ntBASIC18.8■□□□□ 0.6
CLN6Q9NWW5 AL512631.2-201ENST00000604634 923 ntBASIC18.8■□□□□ 0.6
CLN6Q9NWW5 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 AC112907.3-201ENST00000577781 2400 ntBASIC18.8■□□□□ 0.6
CLN6Q9NWW5 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLN6Q9NWW5 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 GUSBP5-201ENST00000418136 578 ntBASIC18.79■□□□□ 0.6
CLN6Q9NWW5 GRAMD4P7-201ENST00000578182 1232 ntBASIC18.79■□□□□ 0.6
CLN6Q9NWW5 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLN6Q9NWW5 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLN6Q9NWW5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLN6Q9NWW5 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms