Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHROOM3Q8TF72 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.14■□□□□ 0.97
SHROOM3Q8TF72 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
SHROOM3Q8TF72 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.14■□□□□ 0.97
SHROOM3Q8TF72 MIR2861-201ENST00000636310 90 ntBASIC21.14■□□□□ 0.97
SHROOM3Q8TF72 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.13■□□□□ 0.97
SHROOM3Q8TF72 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 AC243732.1-201ENST00000612648 864 ntBASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 PLK5-205ENST00000642079 1969 ntBASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 AC006015.1-201ENST00000429970 570 ntBASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 AC073111.5-205ENST00000641717 521 ntBASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC21.12■□□□□ 0.97
SHROOM3Q8TF72 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 MIR663A-201ENST00000385250 93 ntBASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 PPP1R14BP3-201ENST00000509033 445 ntBASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 AC093827.2-201ENST00000512654 315 ntBASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHROOM3Q8TF72 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHROOM3Q8TF72 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM3Q8TF72 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
SHROOM3Q8TF72 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHROOM3Q8TF72 BID-214ENST00000617586 542 ntTSL 5 BASIC21.09■□□□□ 0.97
SHROOM3Q8TF72 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.09■□□□□ 0.97
SHROOM3Q8TF72 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms