Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
HDDC3Q8N4P3 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 MCRIP2P1-201ENST00000394346 511 ntBASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
HDDC3Q8N4P3 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 AC026366.1-201ENST00000488803 879 ntBASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.77■□□□□ 0.92
HDDC3Q8N4P3 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
HDDC3Q8N4P3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
HDDC3Q8N4P3 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 AL589743.5-201ENST00000616611 1050 ntBASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HDDC3Q8N4P3 AC116050.2-201ENST00000612102 1779 ntBASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 KRT18P68-201ENST00000392293 1000 ntBASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HDDC3Q8N4P3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
HDDC3Q8N4P3 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms