Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 SUDS3P1-201ENST00000505831 966 ntBASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 AL354811.1-201ENST00000610286 706 ntBASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 AC142381.2-201ENST00000566120 298 ntBASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.74■■□□□ 1.07
CCDC50Q8IVM0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.73■■□□□ 1.07
CCDC50Q8IVM0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 MIR6084-201ENST00000622012 110 ntBASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.72■■□□□ 1.07
CCDC50Q8IVM0 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 EEF1DP3-203ENST00000566025 782 ntBASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 AC053503.5-201ENST00000601508 636 ntBASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CCDC50Q8IVM0 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.07
CCDC50Q8IVM0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC50Q8IVM0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC50Q8IVM0 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CCDC50Q8IVM0 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 MTURN-203ENST00000409688 843 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 TPRG1LP1-201ENST00000598702 760 ntBASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.7■■□□□ 1.06
CCDC50Q8IVM0 AL358852.1-201ENST00000623174 1268 ntBASIC21.7■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms