Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
TRIM40Q6P9F5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.81■□□□□ 0.76
TRIM40Q6P9F5 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.8■□□□□ 0.76
TRIM40Q6P9F5 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 SPI1-203ENST00000533030 661 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.79■□□□□ 0.76
TRIM40Q6P9F5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TRIM40Q6P9F5 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 AC022517.1-201ENST00000592429 346 ntBASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 RARRES2P11-201ENST00000635158 484 ntBASIC19.77■□□□□ 0.76
TRIM40Q6P9F5 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.77■□□□□ 0.75
TRIM40Q6P9F5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.75
TRIM40Q6P9F5 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.77■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms