Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 MIR935-201ENST00000401179 91 ntBASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 TSPY26P-201ENST00000476365 1326 ntBASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
PPP4R4Q6NUP7 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 AC006128.1-201ENST00000624704 1661 ntBASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 ZNRF2P3-201ENST00000424200 374 ntBASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 OR2I1P-207ENST00000453522 948 ntBASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.73■□□□□ 0.75
PPP4R4Q6NUP7 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.72■□□□□ 0.75
PPP4R4Q6NUP7 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PPP4R4Q6NUP7 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 PCDHAC2-203ENST00000615316 3011 ntBASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms