Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC073648.6-201ENST00000641589 218 ntBASIC21.03■□□□□ 0.96
USP39Q53GS9 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
USP39Q53GS9 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
USP39Q53GS9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.03■□□□□ 0.96
USP39Q53GS9 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.03■□□□□ 0.96
USP39Q53GS9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.02■□□□□ 0.96
USP39Q53GS9 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP39Q53GS9 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.02■□□□□ 0.96
USP39Q53GS9 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC21.02■□□□□ 0.96
USP39Q53GS9 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP39Q53GS9 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP39Q53GS9 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.02■□□□□ 0.96
USP39Q53GS9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC21.02■□□□□ 0.96
USP39Q53GS9 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.02■□□□□ 0.96
USP39Q53GS9 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.02■□□□□ 0.96
USP39Q53GS9 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.02■□□□□ 0.96
USP39Q53GS9 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP39Q53GS9 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
USP39Q53GS9 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
USP39Q53GS9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC21.02■□□□□ 0.95
USP39Q53GS9 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
USP39Q53GS9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.95
USP39Q53GS9 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
USP39Q53GS9 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.01■□□□□ 0.95
USP39Q53GS9 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC21.01■□□□□ 0.95
USP39Q53GS9 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC21.01■□□□□ 0.95
USP39Q53GS9 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC21.01■□□□□ 0.95
USP39Q53GS9 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC21.01■□□□□ 0.95
USP39Q53GS9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC21.01■□□□□ 0.95
USP39Q53GS9 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC21.01■□□□□ 0.95
USP39Q53GS9 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.01■□□□□ 0.95
USP39Q53GS9 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
USP39Q53GS9 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
USP39Q53GS9 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
USP39Q53GS9 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP39Q53GS9 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USP39Q53GS9 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP39Q53GS9 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
USP39Q53GS9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21■□□□□ 0.95
USP39Q53GS9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP39Q53GS9 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21■□□□□ 0.95
USP39Q53GS9 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
USP39Q53GS9 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC21■□□□□ 0.95
USP39Q53GS9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21■□□□□ 0.95
USP39Q53GS9 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
USP39Q53GS9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USP39Q53GS9 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.99■□□□□ 0.95
USP39Q53GS9 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.99■□□□□ 0.95
USP39Q53GS9 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.99■□□□□ 0.95
USP39Q53GS9 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP39Q53GS9 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP39Q53GS9 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.99■□□□□ 0.95
USP39Q53GS9 UBE2SP1-201ENST00000450587 669 ntBASIC20.99■□□□□ 0.95
USP39Q53GS9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.99■□□□□ 0.95
USP39Q53GS9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP39Q53GS9 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP39Q53GS9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
USP39Q53GS9 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.98■□□□□ 0.95
USP39Q53GS9 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
USP39Q53GS9 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
USP39Q53GS9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.98■□□□□ 0.95
USP39Q53GS9 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
USP39Q53GS9 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.98■□□□□ 0.95
USP39Q53GS9 CDV3P1-201ENST00000471403 739 ntBASIC20.98■□□□□ 0.95
USP39Q53GS9 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.98■□□□□ 0.95
USP39Q53GS9 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.98■□□□□ 0.95
USP39Q53GS9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USP39Q53GS9 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
USP39Q53GS9 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
USP39Q53GS9 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
USP39Q53GS9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.97■□□□□ 0.95
USP39Q53GS9 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.97■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms